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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAAGAGCTTGTTGCAAGATTTGTTGGTAAGCCTGCAGCTATTCTTTTTGGCATGGGCTATGTGACAAACTCTGCTATCATTCCAGCGCTGGTTGGGAAGgtatgttctatgttgtgaagatatatgctcaaactttctgttttgttcttttcatgagctctgcagctgaggctactgtaataattgcag

Basic information

species Zea mays
transcript GRMZM2G010202_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G010202_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g70380.1 (Oryza sativa), 5'ss of exon 5
CGAAGAGCTTGTTGCAAGATTTGTTGGTAAGCCTGCAGCTATTCTTTTTGGCATGGGCTATGTGACAAACTCTGCTATCATTCCAGCGCTGGTTGGGAAGgtatgttctatgttgtgaagatatatgctcaaactttctgttttgttcttttcatgagctctgcagctgaggctactgtaataattgcag
 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||  |||||||||||||     |  || |    |||    ||| |    ||||| || | |||||||| |     ||| |||| | | || | |  | |||||||
TGAAGAGCTGGTTGCAAGATTTGTTGGCAAGCCTGCAGCTATTCTTTTTGGCATGGGTTATGTGACGAACTCTGCAATCATTCCTGCCTTGGTTGGGAAGgt-----ccgtgatagagagac---tgc-cgtgttttct-ttctattcttttc-tacatcctggagctaatg-tattat--tgattgcag

upper sequence: GRMZM2G010202_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g70370.1 (Oryza sativa), 5'ss of exon 5
CGAAGAGCTTGTTGCAAGATTTGTTGGTAAGCCTGCAGCTATTCTTTTTGGCATGGGCTATGTGACAAACTCTGCTATCATTCCAGCGCTGGTTGGGAAGgtatgttctatgttgtgaagatatatgctcaaactttctgttttgttcttttcatgagctctgcagctgaggctactgtaataattgcag
 ||||| || ||||||||||||||||| ||||||||||||||||| || |||||||| |||||||| |||||||| |||||||| ||  || ||||||||||  ||   | |       |  || |  ||| | || |||||     ||||   |    | || |||| |   ||   || | ||| |||
TGAAGAACTGGTTGCAAGATTTGTTGGCAAGCCTGCAGCTATTCTCTTCGGCATGGGTTATGTGACGAACTCTGCGATCATTCCTGCCTTGATTGGGAAGgtcagtggca-gagaaactgccatgttttcataattcctgtt-----ctttctgtacattatggagctaa---tatattattgatttcag

upper sequence: GRMZM2G010202_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA02G07250.1 (Glycine max), 5'ss of exon 5
CGAAGAGCTTGTTGCAAGATTTGTTGGTAAGCCTGCAGCTATTCTTTTTGGCATGGGCTATGTGACAAACTCTGCTATCATTCCAGCGCTGGTTGGGAAGgtatgttctatgttgtgaagatatatgctcaaactttctgttttgttcttttcatgagctctgcagctgaggctactgtaataattgcag
 || |||  ||||||||  |||||||| ||||| || |||||  ||||||| ||||||||||||||||||||||||||  ||||||   || | |||||||| |||   || | |||    ||  |  |  |           |  |  || |||||  | ||| | ||| |  ||| |  |  ||||||
GGAGGAGTGTGTTGCAAACTTTGTTGGGAAGCCAGCTGCTATAGTTTTTGGTATGGGCTATGTGACAAACTCTGCTATTCTTCCAGTCTTGATGGGGAAGgtttgtgaaatttagtggttttaccttgttgag------acactaatgattgcatga-ttatgc-gttgatgtaactttctt--ttgcag

upper sequence: GRMZM2G010202_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 5
CGAAGAGCTTGTTGCAAGATTTGTTGGTAAGCCTGCAGCTATTCTTTTTGGCATGGGCTATGTGACAAACTCTGCTATCATTCCAGCGCTGGTTGGGAAGgtatgttctatgttgtgaagatatatgctcaaactttctgttttgttcttttcatgagctctgcagctgaggctactgtaataattgcag
 || |||  |||||||| ||||||||| ||||| || |||||  ||||||| |||||||||||||| |||||||||||  ||||||   || | || ||||| |||   || | |||    ||  |  |  |           |  | ||| |||||    |     |||    ||| |  |  || |||
GGAGGAGTGTGTTGCAAAATTTGTTGGGAAGCCAGCTGCTATAGTTTTTGGTATGGGCTATGTGACGAACTCTGCTATTCTTCCAGTCTTGATGGGAAAGgtttgtgaaatttagtggttttaccttgttgag------acactaatgtttgcatgaatattc--attgatataactttctt--ttacag

upper sequence: GRMZM2G010202_T02 (Zea mays), 5'ss of exon 5
lower sequence: AT3G48790.1 (Arabidopsis thaliana), 5'ss of exon 1
CGAAGAGCTTGTTGCAAGATTTGTTGGTAAGCCTGCAGCTATTCTTTTTGGCATGGGCTATGTGACAAACTCTGCTATCATTCCAGCGCTGGTTGGGAAGgtatgttctatgttgtg-aagatatatgctcaaactttctgttttgttcttttcatgagctctgcagctgaggc-tactgtaataattgcag
 || ||   |||||| | |||||| || || ||||| ||| || ||||||||||||||||  | |||||||| ||||||||| | |   || |||| ||||||     ||     ||  | ||  | ||| |   || ||         |    |||   |  | |||| |     || |  ||   | |||
TGAGGAATGTGTTGCTAAATTTGTGGGAAAACCTGCTGCTGTTGTTTTTGGCATGGGCTACTTAACAAACTCGGCTATCATTTCTGTCTTGATTGGCAAGgtaatgcatacaccttgtgatatgaacgcttatg-ttactaccaaaacat----atgtttttagtagcttaattacacagccatgtatacag

upper sequence: GRMZM2G010202_T02 (Zea mays), 5'ss of exon 5
lower sequence: AT3G48780.1 (Arabidopsis thaliana), 5'ss of exon 5
CGAAGAGCTTGTTGCAAGATTTGTTGGTAAGCCTGCAGCTATTCTTTTTGGCATGGGCTATGTGACAAACTCTGCTATCATTCCAGCGCTGGTTGGGAAGgtatgttctatgttgtgaagatatatgctcaaactttctgttttgttcttttcatgagctct-gcagctgaggctactgtaataattgcag
 || ||   |||||| | || ||| ||  | ||||| ||| || ||||||||||||| ||||  |||||||| ||||||||||| |   || |||| |||||| ||  |||| ||  |     | || |  |   || ||||     |    | |  | | | | ||||     | |||  ||   | |||
TGAGGATTGTGTTGCTAAATATGTCGGACAACCTGCTGCTGTTATTTTTGGCATGGGTTATGCAACAAACTCGGCTATCATTCCCGTCTTGATTGGAAAGgtaagta-tatgctgctacatcttgtgatggacacttatgttactcccaaaacctatgtttttgtagctttatgtgctgccatctgtacag

upper sequence: GRMZM2G010202_T02 (Zea mays), 5'ss of exon 5
lower sequence: AT5G23670.1 (Arabidopsis thaliana), 5'ss of exon 5
CGAAGAGCTTGTTGCAAGATTTGTTGGTAAGCCTGCAGCTATTCTTTTTGGCATGGGCTATGTGACAAACTCTGCTATCATTCCAGCGCTGGTTGGGAAGgtatgttctatgttgtgaagatatatgctcaaactttctgttttgttcttttcatgagctctgc---agctgaggcta----ctgtaataa-ttgcag----
 || ||   |||| | || ||||| || |||||||| ||| || ||||||||||||||||||  ||||| || |||||||||||||   || |||| ||||||||   |   ||       | |||| | ||    | |||| | |  |||  |  | |  |||   || |||   |     |||| ||   ||| |     
TGAGGAATGTGTTACTAGGTTTGTGGGAAAGCCTGCTGCTGTTGTTTTTGGCATGGGCTATGCAACAAATTCGGCTATCATTCCAGTCTTGATTGGAAAGgtatgcattggtttaccc---tttatgatgaaggcgtatgttgtctcttttctaaaacccatgcttaagttgatattttttcctgtgatgtcttgtatacag

upper sequence: GRMZM2G010202_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 5
CGAAGAGCTTGTTGCAAGATTTGTTGGTAAGCCTGCAGCTATTCTTTTTGGCATGGGCTATGTGACAAACTCTGCTATCATTCCAGCGCTGGTTGGGAAGgtatgt-----tctatgttgtgaagatatatgct---caaactttctgttttgttcttttcatgagctctgcagctgaggcta----ctgtaataattgcag----------
 || ||   ||||||||  |||||||| |||||||| || ||  | ||||||||||||||||||||||||||||||||| |||| |  ||| ||||||||||||       | ||  |||  |   | |||  |   |||   || |||  ||         |||  |||  |    | |  |    ||    | ||||             
GGAGGAATGTGTTGCAAACTTTGTTGGAAAGCCTGCTGCAATAGTCTTTGGCATGGGCTATGTGACAAACTCTGCTATCCTTCCGGTCCTGATTGGGAAGgtattcagttatttaaattgatattgtctatattgtacaaggcttatgtaatgcatgggcattgaattctttattcaatgtgaaattcttctttcattgtgatgattcacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26559603|gb|CA831838.1|CA831838
EST:     GCATGGGCTATGTGACAAACTCTGCTATCATTCCAGCGCTGGTTGGGAAG                         GGAAGCCTGATTATTAGTGATTCACTGAACCATAATTCTATAGTCAACGGA
genomic: GCATGGGCTATGTGACAAACTCTGCTATCATTCCAGCGCTGGTTGGGAAGgtatgttcta ... ataattgcagGGAAGCCTGATTATTAGTGATTCACTGAACCATAATTCTATAGTCAACGGA
EST: gi|19821837|gb|BQ047861.1|BQ047861
EST:     GCATGGGCTATGTGACAAACTCTGCTATCATTCCAGCGCTGGTTGGGAAG                         GGAAGCCTGATTATTAGTGATTCACTGAACCATAATTCTATAGTCAACGGA
genomic: GCATGGGCTATGTGACAAACTCTGCTATCATTCCAGCGCTGGTTGGGAAGgtatgttcta ... ataattgcagGGAAGCCTGATTATTAGTGATTCACTGAACCATAATTCTATAGTCAACGGA
EST: gi|22935830|gb|BU572105.1|BU572105
EST:     GCATGGGCTATGTGACAAACTCTGCTATCATTCCAGCGCTGGTTGGGAAG                         GGAAGCCTGATTATTAGTGATTCACTGAACCATAATTCTATAGTCAACGGA
genomic: GCATGGGCTATGTGACAAACTCTGCTATCATTCCAGCGCTGGTTGGGAAGgtatgttcta ... ataattgcagGGAAGCCTGATTATTAGTGATTCACTGAACCATAATTCTATAGTCAACGGA
EST: gi|87151662|gb|DY396451.1|DY396451
EST:     GCATGGGCTATGTGACAAACTCTGCTATCATTCCAGCGCTGGTTGGGAAG                         GGAAGCCTGATTATTAGTGATTCACTGAACCATAATTCTATAGTCAACGGA
genomic: GCATGGGCTATGTGACAAACTCTGCTATCATTCCAGCGCTGGTTGGGAAGgtatgttcta ... ataattgcagGGAAGCCTGATTATTAGTGATTCACTGAACCATAATTCTATAGTCAACGGA
EST: gi|20300198|gb|BQ163141.1|BQ163141
EST:     GCATGGGCTATGTGACAAACTCTGCTATCATTCCAGCGCTGGTTGGGAAG                         GGAAGCCTGATTATTAGTGATTCACTGAACCATAATTCTATAGT
genomic: GCATGGGCTATGTGACAAACTCTGCTATCATTCCAGCGCTGGTTGGGAAGgtatgttcta ... ataattgcagGGAAGCCTGATTATTAGTGATTCACTGAACCATAATTCTATAGT
EST: gi|24934602|gb|CA452820.1|CA452820
EST:     GCATGGGCTATGTGACAAACTCTGCTATCATTCCAGCGCTGGTTGGGAAG                         GGAAGCCTGATTATTAGTGATTCACTGAACCATAATTCTATAGTCAACGGA
genomic: GCATGGGCTATGTGACAAACTCTGCTATCATTCCAGCGCTGGTTGGGAAGgtatgttcta ... ataattgcagGGAAGCCTGATTATTAGTGATTCACTGAACCATAATTCTATAGTCAACGGA
EST: gi|18964841|gb|BM661241.1|BM661241
EST:     GCATGGGCTATGTGACAAACTCTGCTATCATTCCAGCGCTGGTTGGGAAG                         GGAAGCCTGATTATTAGTGATTCACTGA-CCATAATTCTATAGTCA-CGGA
genomic: GCATGGGCTATGTGACAAACTCTGCTATCATTCCAGCGCTGGTTGGGAAGgtatgttcta ... ataattgcagGGAAGCCTGATTATTAGTGATTCACTGAACCATAATTCTATAGTCAACGGA
EST: gi|87152364|gb|DY397153.1|DY397153
EST:     GCATGGGCTATGTGACAAACTCTGCTATCATTCCAGCGCTGGTTGGGAAG                         GGAAGCCTGATTATTAGTGATTCACTGAACCATAATTCTATAGTCAACGGA
genomic: GCATGGGCTATGTGACAAACTCTGCTATCATTCCAGCGCTGGTTGGGAAGgtatgttcta ... ataattgcagGGAAGCCTGATTATTAGTGATTCACTGAACCATAATTCTATAGTCAACGGA
EST: gi|87156277|gb|DY401066.1|DY401066
EST:     GCATGGGCTATGTGACAAACTCTGCTATCATTCCAGCGCTGGTTGGGAAG                         GGAAGCCTGATTATTAGTGATTCACTGAACCATAATTCTATAGTCAACGGA
genomic: GCATGGGCTATGTGACAAACTCTGCTATCATTCCAGCGCTGGTTGGGAAGgtatgttcta ... ataattgcagGGAAGCCTGATTATTAGTGATTCACTGAACCATAATTCTATAGTCAACGGA