1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TACACTATTGAGGAAAAGGTGATTGAGAGAGCATATAAGAAGCTAGCATTGGATGCTTTGGTTATTCAGCAAGGACGATTGGCAGAGCAGAAAAgtatggttttgatatttgccatttctatttgttttaagcattttttactagtttgatctggattgttctgacaacattctcatttattaag
species | Zea mays |
transcript | GRMZM2G010085_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGCATTGGATGCTTTGGTTATTCAGCAAGGACGATTGGCAGAGCAGAAAA CTGTCAATAAGGATGATCTTCTGCAAATGGTGCGEST: gi|87155727|gb|DY400516.1|DY400516
genomic: AGCATTGGATGCTTTGGTTATTCAGCAAGGACGATTGGCAGAGCAGAAAAgtatggtttt ... atttattaagCTGTCAATAAGGATGATCTTCTGCAAATGGTGCG
EST: AGCATTGGATGCTTTGGTTATTCAGCAAGGACGATTGGCAGAGCAGAAAA CTGTCAATAAGGATGATCTTCTGCAAATGGTGCGGTTTGGTGCTGAAATGGEST: gi|32930781|gb|CF035593.1|CF035593
genomic: AGCATTGGATGCTTTGGTTATTCAGCAAGGACGATTGGCAGAGCAGAAAAgtatggtttt ... atttattaagCTGTCAATAAGGATGATCTTCTGCAAATGGTGCGGTTTGGTGCTGAAATGG
EST: AGCATTGGATGCTTTGGTTATTCAGCAAGGACGATTGGCAGAGCAGAAAA CTGTCAATAAGGATGATCTTCTGCAAATGGTGCGGTTTGGTGCTGAAATGGEST: gi|31351381|gb|CD435738.1|CD435738
genomic: AGCATTGGATGCTTTGGTTATTCAGCAAGGACGATTGGCAGAGCAGAAAAgtatggtttt ... atttattaagCTGTCAATAAGGATGATCTTCTGCAAATGGTGCGGTTTGGTGCTGAAATGG
EST: AGCATTGGATGCTTTGGTTATTCAGCAAGGACGATTGGCAGAGCAGAAAA CTGTCAATAAGGATGATCTTCTGCAAATGGTGCGGTTTGGTGCTGAAATGGEST: gi|32930784|gb|CF035596.1|CF035596
genomic: AGCATTGGATGCTTTGGTTATTCAGCAAGGACGATTGGCAGAGCAGAAAAgtatggtttt ... atttattaagCTGTCAATAAGGATGATCTTCTGCAAATGGTGCGGTTTGGTGCTGAAATGG
EST: AGCATTGGATGCTTTGGTTATTCAGCAAGGACGATTGGCAGAGCAGAAAA CTGTCAATAAGGATGATCTTCTGCAAATGGTGCGGTTTGGTGCTGAAATGGEST: gi|22546162|gb|BU098473.1|BU098473
genomic: AGCATTGGATGCTTTGGTTATTCAGCAAGGACGATTGGCAGAGCAGAAAAgtatggtttt ... atttattaagCTGTCAATAAGGATGATCTTCTGCAAATGGTGCGGTTTGGTGCTGAAATGG
EST: AGCATTGGATGCTTTGGTTATTCAGCAAGGACGATTGGCAGAGCAGAAAA CTGTCAATAAGGATGATCTTCTGCAAATGGTGCGGTTTGGTGCTGAAATGG
genomic: AGCATTGGATGCTTTGGTTATTCAGCAAGGACGATTGGCAGAGCAGAAAAgtatggtttt ... atttattaagCTGTCAATAAGGATGATCTTCTGCAAATGGTGCGGTTTGGTGCTGAAATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACACTATTGAGGAAAAGGTGATTGAGAGAGCATATAAGAAGCTAGCATTGGATGCTTTGGTTATTCAGCAAGGACGATTGGCAGAGCAGAAAAgtatggttttgatatttgccatttctatttgttttaagcattttttactagtttgatctggattgttctgacaacattctcatttattaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG