1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTAACGCCTAATCTTTATGGCAATTTGGTGGCTAACACGGCTGCAGGTATTGTTGGAGGGACGGGCATCATGCCTAGAGgtagggattgcagctaattctttattatttgttgttttcccctatgaaaaaaattgttctagcagcgtttcatttctgtaatttattacaaaaaaataatattttgggcatgacttatctccctttgtccctacattgttacatatttgtaaag
species | Zea mays |
transcript | GRMZM2G008647_T04 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGCTAACACGGCTGCAGGTATTGTTGGAGGGACGGGCATCATGCCTAGAG ACTTTGTGGCATATGGAACTTCTTGGAAGCTTTT-GCTATGGTCTTCATCAEST: gi|87156605|gb|DY401394.1|DY401394
genomic: GGCTAACACGGCTGCAGGTATTGTTGGAGGGACGGGCATCATGCCTAGAGgtagggattg ... atttgtaaagACTTTGTGGCATATGGAACTTCTTGGA-GCTTTTTGCTATGGTCTTCATCA
EST: GGCTAACACGGCTGCAGGTATTGTTGGAGGGACGGGCATCATGCCTAGAG ACTTTGTGGCATATGGAACTTCTTGGAGCTTTTTGCTATGGTCTTCATCAAEST: gi|149045408|gb|EE047831.2|EE047831
genomic: GGCTAACACGGCTGCAGGTATTGTTGGAGGGACGGGCATCATGCCTAGAGgtagggattg ... atttgtaaagACTTTGTGGCATATGGAACTTCTTGGAGCTTTTTGCTATGGTCTTCATCAA
EST: GGCTAACACGGCTGCAGGTATTGTTGGAGGGACGGGCATCATGCCTAGAG ACTTTGTGGCATATGGAACTTCTTGGAGCTTTTTGCTATGGTCTTCATCAA
genomic: GGCTAACACGGCTGCAGGTATTGTTGGAGGGACGGGCATCATGCCTAGAGgtagggattg ... atttgtaaagACTTTGTGGCATATGGAACTTCTTGGAGCTTTTTGCTATGGTCTTCATCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAACGCCTAATCTTTATGGCAATTTGGTGGCTAACACGGCTGCAGGTATTGTTGGAGGGACGGGCATCATGCCTAGAGgtagggattgcagctaattctttattatttgttgttttcccctatgaaaaaaattgttctagcagcgtttcatttctgtaatttattacaaaaaaataatattttgggcatgacttatctccctttgtccctacattgttacatatttgtaaag
- - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG