1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATATTCTGTATGACTCGTGGTCACCAGCGATGACCGTGAGCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtgacacttagtcatcatactacttgatctattcaaacctcggtgctctcactccatagccagactctaactagctagaatgtattgtttgcag
species | Zea mays |
transcript | GRMZM2G007381_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCGCAACGGGAGGEST: gi|71431746|gb|DR812796.1|DR812796
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtgacactta ... ttgtttgcagCAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCGCAACGGGAGGEST: gi|211172115|gb|FK994020.1|FK994020
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtgacactta ... ttgtttgcagCAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGCCCGGCGGACAATGACCGCTATGTTAEST: gi|45846873|gb|CN070816.1|CN070816
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtgacactta ... ttgtttgcagCAACGCCCGGCGGACAATGACCGCTATGTTA
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGCCCGGCGGACAATGGCCGCTATGTTAGGAACTGCCGCAACGGGAGGEST: gi|50331624|gb|CO526750.1|CO526750
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtgacactta ... ttgtttgcagCAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCGCAACGGGAGGEST: gi|211172114|gb|FK994019.1|FK994019
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtgacactta ... ttgtttgcagCAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCGCAACGGGAGGEST: gi|116827090|gb|EC870952.1|EC870952
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtgacactta ... ttgtttgcagCAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCGCAACGGGAGGEST: gi|211421811|gb|FL084938.1|FL084938
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtgacactta ... ttgtttgcagCAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCGCAACGGGAGGEST: gi|17931977|gb|BM268937.1|BM268937
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtgacactta ... ttgtttgcagCAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCGCAACGGGAGGEST: gi|78081936|gb|DV510348.1|DV510348
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtgacactta ... ttgtttgcagCAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCGCAACGGGAGGEST: gi|71431745|gb|DR812795.1|DR812795
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtgacactta ... ttgtttgcagCAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCGCAACGGGAGGEST: gi|16925448|gb|BM078516.1|BM078516
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtgacactta ... ttgtttgcagCAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCGCAACGGGAGGEST: gi|18165814|gb|BM335659.1|BM335659
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtgacactta ... ttgtttgcagCAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCGCAACGGGAGGEST: gi|211215511|gb|FL424481.1|FL424481
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtgacactta ... ttgtttgcagCAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCCGCA-CGGGAGEST: gi|29946817|gb|CB816340.1|CB816340
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtgacactta ... ttgtttgcagCAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCC-GCAACGGGAG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCGCAACGGGAGGEST: gi|22819231|gb|BU499321.1|BU499321
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtgacactta ... ttgtttgcagCAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCGCAACGGGAGGEST: gi|16919478|gb|BM074211.1|BM074211
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtgacactta ... ttgtttgcagCAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCGCAACGGGAGGEST: gi|211172116|gb|FK994021.1|FK994021
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtgacactta ... ttgtttgcagCAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGCCCGGCGGACAATTGACCGCTATGTTAGGAACTGCCGCAACGGGAEST: gi|29945777|gb|CB815814.1|CB815814
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtgacactta ... ttgtttgcagCAACGCCCGGCGGACAAT-GACCGCTATGTTAGGAACTGCCGCAACGGGA
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCGCAACGGGAGGEST: gi|211172113|gb|FK994018.1|FK994018
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtgacactta ... ttgtttgcagCAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCGCAACGGGAGGEST: gi|211172112|gb|FK994017.1|FK994017
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtgacactta ... ttgtttgcagCAACGCCCGGCGGACAATGACCGCTATGTTAGGAACTGCCGCAACGGGAGG
EST: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAG CA-CGCCCGGCG-ACAATGA
genomic: GCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtgacactta ... ttgtttgcagCAACGCCCGGCGGACAATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATTCTGTATGACTCGTGGTCACCAGCGATGACCGTGAGCTCTGTCTGTATCAGTATCCTGTCTATGTTGTCTAGTTCGCCAGCAAAGgtgacacttagtcatcatactacttgatctattcaaacctcggtgctctcactccatagccagactctaactagctagaatgtattgtttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG