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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGCATCAGATGGAATATGGGACGCTCTGTCCTCAGAGAGTGCTGCTCAGGCGTGCCGGGGATTACGTGCAGAACTGGCTGCAAAACTTGTTGTTAAGgtgattataaatgtggctgggctattacatcatcctgtactttattatctcaatcgtctaattagtaaccatcttgcttgtccag

Basic information

species Zea mays
transcript GRMZM2G006429_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G006429_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g18970.1 (Oryza sativa), 5'ss of exon 5
AATTGCATCAGATGGAATATGGGACGCTCTGTCCTCAGAGAGTGCTGCTCAGGCGTGCCGGGGATTACGTGCAGAACTGGCTGCAAAACTTGTTGTTAAGgtgattataaatgtggctgggcta------ttacatcatcctgta---------ctttattatctcaatcgtctaattagtaaccatcttgcttgtccag
|||||||||||||||||| ||||| || |||||||||||   |||||||||||| ||||| ||||| | |||||| ||||||||||| ||||| || |||||  ||  |  ||||| |    |       ||| ||| | || ||         ||| | |||||  ||| || || |   | ||||     |||| |||
AATTGCATCAGATGGAATTTGGGATGCACTGTCCTCAGAAGCTGCTGCTCAGGCATGCCGAGGATTGCCTGCAGAGCTGGCTGCAAAGCTTGTCGTGAAGgtagtttcacgtgtggtttcagtttcttgtttatatcttactttatatggaatgcttcactatcttgatcatccaactgagatccattcatattgtacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71314548|gb|DR793896.1|DR793896
EST:     AGGCGTGCCGGGGATTACGTGCAGAACTGGCTGCAAAACTTGTTGTTAAG                         CAAGCTCTGAAGACAAGTGGGCTGAAAGATGACACCACATGTGTGGTTGTC
genomic: AGGCGTGCCGGGGATTACGTGCAGAACTGGCTGCAAAACTTGTTGTTAAGgtgattataa ... gcttgtccagCAAGCTCTGAAGACAAGTGGGCTGAAAGATGACACCACATGTGTGGTTGTC
EST: gi|1546867|gb|AA054810.1|AA054810
EST:     AGGCGTGCCGGGGATTACGTGCAGAACTGGCTGCAAAACTTGTTGTTAAG                         CAAGCTCTGAAGACAAGTGGGCTGAAAGATGACACCACATGTGTG-TTGTC
genomic: AGGCGTGCCGGGGATTACGTGCAGAACTGGCTGCAAAACTTGTTGTTAAGgtgattataa ... gcttgtccagCAAGCTCTGAAGACAAGTGGGCTGAAAGATGACACCACATGTGTGGTTGTC
EST: gi|26455794|gb|CA827377.1|CA827377
EST:     AGGCGTGCCGGGGATTACGTGCAGAACTGGCTGCAAAACTTGTTGTTAAG                         CAAGCTCTGAAGACAAGTGGGCTGAAAGATGACACCACATGTGTGGTTGTC
genomic: AGGCGTGCCGGGGATTACGTGCAGAACTGGCTGCAAAACTTGTTGTTAAGgtgattataa ... gcttgtccagCAAGCTCTGAAGACAAGTGGGCTGAAAGATGACACCACATGTGTGGTTGTC