Sequence
atgc intronic sequence ATGC exonic sequenceTGCTGTTGGACAAGATATGATAAATTCACTGGCTGATGTTGAGGATACAGAAAAGTATGGGCGATATCTTCGCAGATCTTACATTGAAGATAATAGAAAGgtgagttgatataatcatactcctatagatgttggcaccgaccacagtagacagttccatgcacaataaaaaagttgtgcagttgataattagattttct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G006428_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os04g41470.1 (Oryza sativa), 5'ss of exon 5
TGCTGTTGGACAAGATATGATAAATTCACTGGCTGATGTTGAGGATACAGAAAAGTATGGGCGATATCTTCGCAGATCTTACATTGAAGATAATAGAAAGgtgagttgatataatcatactcctatagatg----ttggcaccg--accacagtagacagttccatgcacaataaaaaagttgtgcagttgataattagattttct
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TGCTGTTGGTCAAGATATGATCAATTCACTGGCTGATGACGAGGATAGGGAAAAGTATGGGCGATATCTTCGCAGATCTTACATTGAAGATAATAGGAAGgtaggttgatcataatacaaatgaataaatgaaaatctgtatggctgctactgtgaattattatatgttttatgtaaac------cagccattctcctgcctttgc
upper sequence: GRMZM2G006428_T01 (Zea mays), 5'ss of exon 5
lower sequence: EFJ08409 (Selaginella moellendorffii), 5'ss of exon 5
TGCTGTTGGACAAGATATGATAAATTCACTGGCTGATGTTGAGGATACAGAAAAGTATGGGCGATATCTTCGCAGATCTTACATTGAAGATAATAGAAAGgtgagttgatataatcatactcctatagatgttggcaccgaccacagtagacagttc-catgcacaataaaaaagttgtgcagttgataattagattttct---------------
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TGCCATTGGGGATGACATGATAATGTCGTTGGTCTCGGAAGAAGACCGTAACAAGTACATGCGATTTCTCCTTAGATCTTACGTTGAAGATAATAGAAAGgtct-ttcctcttttttttttctttt---tgtttccactga-----gtggattattcataggaagaatactgaaattttgttttttttttctttttttttttcttctcgtgcgcag
upper sequence: GRMZM2G006428_T01 (Zea mays), 5'ss of exon 5
lower sequence: EFJ15174 (Selaginella moellendorffii), 5'ss of exon 5
TGCTGTTGGACAAGATATGATAAATTCACTGGCTGATGTTGAGGATACAGAAAAGTATGGGCGATATCTTCGCAGATCTTACATTGAAGATAATAGAAAGgtgagttgatataatcatactcctatagatgttggcaccgaccacagtagacagttc-catgcacaataaaaaagttgtgcagttgataattagattttct--------------
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TGCCATTGGGGATGACATGATAATGTCGTTGGTCTCGGAAGAAGACCGTAACAAGTACATGCGATTTCTCCTTAGATCTTACGTTGAAGATAATAGAAAGgtctttcctcttttttttttttcttt--ttgtttccactga-----gtggattattcataggaagaatactgaaattttgtttttgttttcttttttttttcttctcgtgcgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76281609|gb|DV021177.1|DV021177EST: AAAAGTATGGGCGATATCTTCGCAGATCTTACATTGAAGATAATAGAAAG ACAAAATGGTGTCCTGCGCCTGGATGTGAATATGCAGCGGAATTCGTCATG
genomic: AAAAGTATGGGCGATATCTTCGCAGATCTTACATTGAAGATAATAGAAAGgtgagttgat ... tgtggaacagACAAAATGGTGTCCTGCGCCTGGATGTGAATATGCAGCGGAATTCGTCATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCTGTTGGACAAGATATGATAAATTCACTGGCTGATGTTGAGGATACAGAAAAGTATGGGCGATATCTTCGCAGATCTTACATTGAAGATAATAGAAAGgtgagttgatataatcatactcctatagatgttggcaccgaccacagtagacagttccatgcacaataaaaaagttgtgcagttgataattagattttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaaaa