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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATACTTCATACACAACCATTTGTCATTTACGGTGAAGTATCACAAGGACGATAATTTGGAACATTCTAGAATAGTGGGATTTGAGGTCAACCCACACAGgtttacctcttaactttgtttggcgggatttattcttcttgtgctttatgaaatggacctaaggtattttggtacatattttgccag

Basic information

species Zea mays
transcript GRMZM2G006117_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G006117_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os09g38530.1 (Oryza sativa), 5'ss of exon 5
AATACTTCATACACAACCATTTGTCATTTACGGTGAAGTATCACAAGGACGATAATTTGGAACATTCTAGAATAGTGGGATTTGAGGTCAACCCACACAGgtttacctcttaactttgtttggcgggatttattcttcttgtgctttatg-aaatggacctaaggtat-tttggtacatattttgccag-----
| |||||||| ||||||||||||||||||   |||||||| |||||||||||| |||  |||| ||||||||||||||||||||||||||| ||| |||||||| | |  || ||||||     |   |||    | | | |||| |||  |||||  ||||| | || | |  |  ||||  ||  |      
AGTACTTCATTCACAACCATTTGTCATTTTTAGTGAAGTACCACAAGGACGATGATTCAGAACTTTCTAGAATAGTGGGATTTGAGGTCAAGCCATACAGgttttctttcta-ctttgtgctttgatgttttacttgcatatgctctatataaatgagcctaatgcatgtgttatttatatactgttatggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32929714|gb|CF034526.1|CF034526
EST:     GATAATTTGGAACATTCTAGAATAGTGGGATTTGAGGTCAACCCACACAG                         TGTCAAGCACCAGGTTGACGATAAATGGAATGGTGTAGACACCCGCTTGAG
genomic: GATAATTTGGAACATTCTAGAATAGTGGGATTTGAGGTCAACCCACACAGgtttacctct ... attttgccagTGTCAAGCACCAGGTTGACGATAAATGGAATGGTGTAGACACCCGCTTGAG
EST: gi|149106813|gb|EE188710.2|EE188710
EST:     GATAATTTGGAACATTCTAGAATAGTGGGATTTGAGGTCAACCCACACAG                         TGTCAAGCACCAGGTTGACGATAAATGGAATGGTGTAGACACCCGCTTGAG
genomic: GATAATTTGGAACATTCTAGAATAGTGGGATTTGAGGTCAACCCACACAGgtttacctct ... attttgccagTGTCAAGCACCAGGTTGACGATAAATGGAATGGTGTAGACACCCGCTTGAG
EST: gi|76018555|gb|DT945725.1|DT945725
EST:     GATAATTTGGAACATTCTAGAATAGTGGGATTTGAGGTCAACCCACACAG                         TGTCAAGCACCAGGTTGACGATAAATGGAATGGTGTAGACACCCGCTTGAG
genomic: GATAATTTGGAACATTCTAGAATAGTGGGATTTGAGGTCAACCCACACAGgtttacctct ... attttgccagTGTCAAGCACCAGGTTGACGATAAATGGAATGGTGTAGACACCCGCTTGAG