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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAACAAGAGGAGTGAACGAAGAGTCAATATTGCATGCTCTGCCTGCAGACCTTCGACGTGACATTAAGCGCCACCTTTGCCTGGGTCTTGTTCGACGGgtaaatacttctacatgcttttgtcaatgtacatatgaaataaacttttgaaacttctatggttggatgatggttaccaccatttcatttctgcatatac...

Basic information

species Zea mays
transcript GRMZM2G005791_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G005791_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g54760.1 (Oryza sativa), 5'ss of exon 6
TGCAACAAGAGGAGTGAACGAAGAGTCAATATTGCATGCTCTGCCTGCAGACCTTCGACGTGACATTAAGCGCCACCTTTGCCTGGGTCTTGTTCGACGGgtaaatacttctacatgcttttgtcaatgtacatatgaaataaacttttgaaacttctatggttggatgatggttaccaccatttcatttctgcata-tac--
 |||||  |||||||||| ||||| |||||||| || ||||| |||||||| ||||| ||||||||||| || ||||||||| ||||||||||||| ||||||||||||| | ||||||||| | ||  ||||    || ||||  |||||||||  | ||      |  || |      | ||| |    || ||  |||  
CGCAACTCGAGGAGTGAATGAAGAATCAATATTACAGGCTCTTCCTGCAGATCTTCGTCGTGACATTAAACGTCACCTTTGCTTGGGTCTTGTTCGCCGGgtaaatacttttgcatgcttttataaa-atacaccc-aagtaaatatttgaaactgttgtg-cgatcttttgatgtttttcttttaagcaatgaatggtacta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74234952|gb|DT642866.1|DT642866
EST:     ACCTTCGACGTGACATTAAGCGCCACCTTTGCCTGGGTCTTGTTCGACGG                         GTTCCTTTTTTCTCCCAGATGGATGATCAGCTTCTTGATGCCATCTGTGAG
genomic: ACCTTCGACGTGACATTAAGCGCCACCTTTGCCTGGGTCTTGTTCGACGGgtaaatactt ... aatgttgcagGTTCCTTTTTTCTCCCAGATGGATGATCAGCTTCTTGATGCCATCTGTGAG