1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCACACAAACTTAGCATTCCAGAAAATCTTTTCTTTGCCACCAGAAGAATTTCTTATCAATGATTTTACTTGTCACTTAAAGAGGAAAATGCTAACACAGgtaaatgttcattacacttatttgcattttgtgcttcgttttatcgcataataatgtgggtgagcctctaaccagttcataatacttcaacacccttgtt...
species | Zea mays |
transcript | GRMZM2G005195_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTCTTATCAATGATTTTACTTGTCACTTAAAGAGGAAAATGCTAACACAG GGTCGTATTTTTCTATCTCCAAGAATATTTGGGTTTTACACAAATCTTTTTEST: gi|24934560|gb|CA452778.1|CA452778
genomic: TTCTTATCAATGATTTTACTTGTCACTTAAAGAGGAAAATGCTAACACAGgtaaatgttc ... tgtgttgcagGGTCGTATTTTTCTATCTCCAAGAATATTTGGGTTTTACACAAATCTTTTT
EST: TTCTTATCAATGATTTTACTTGTCACTTAAAGAGGAAAATGCTAACACAG GGTCGTATTTTTCTATCTCCAAGAATATTTGGGTTTTACACAAATCTTTTTEST: gi|211352922|gb|FL033083.1|FL033083
genomic: TTCTTATCAATGATTTTACTTGTCACTTAAAGAGGAAAATGCTAACACAGgtaaatgttc ... tgtgttgcagGGTCGTATTTTTCTATCTCCAAGAATATTTGGGTTTTACACAAATCTTTTT
EST: TTCTTATCAATGATTTTACTTGNCACTTAAAGAGGAAAATGCTAACACAG GGTCGTATTTTTCTATCTCCAAGAATATTTGGGTTTTACACAAATCTTTTT
genomic: TTCTTATCAATGATTTTACTTGTCACTTAAAGAGGAAAATGCTAACACAGgtaaatgttc ... tgtgttgcagGGTCGTATTTTTCTATCTCCAAGAATATTTGGGTTTTACACAAATCTTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCACACAAACTTAGCATTCCAGAAAATCTTTTCTTTGCCACCAGAAGAATTTCTTATCAATGATTTTACTTGTCACTTAAAGAGGAAAATGCTAACACAGgtaaatgttcattacacttatttgcattttgtgcttcgttttatcgcataataatgtgggtgagcctctaaccagttcataatacttcaacacccttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA