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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGAGGCGGAGATCTCGCCATCAACACTATATGCCATTGCCTGTGTCACGGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTGgtgtgtttagtttggtgtgttcccaaagttttatggtgttgcatctctgttcaaaaaacttattatacttgtttcatgtttgtag

Basic information

species Zea mays
transcript GRMZM2G004528_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G004528_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g09250.2 (Oryza sativa), 5'ss of exon 5
AACGAGGCGGAGATCTCGCCATCAACACTATATGCCATTGCCTGTGTCACGGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTGgtgtgtttagtttggtgtgttcccaaagttttatggtgttgcatctctgttcaaaaaacttattatacttgtttcatgtttgtag
|||||||||||||| || ||||| ||||| |||||||||||||| |||| ||||||  | |||||||| || ||||| || |||||||| |||||||||||| |||  | |||  |||||    | |||  ||||  |||   | |||     |    | |    || ||||||  ||| |  ||
AACGAGGCGGAGATATCACCATCGACACTGTATGCCATTGCCTGCGTCATGGAGGGTATACCGTTCATTAACGGGAGTCCTCAGAACACCTTTGTGCCTGgtatgt--aattttctgtgt----agagtagtatgcggtttattttctc----aggttcatggcttatttgtttactgtgtacag

upper sequence: GRMZM2G004528_T03 (Zea mays), 5'ss of exon 5
lower sequence: EFJ37320 (Selaginella moellendorffii), 5'ss of exon 5
AACGAGGCGGAGATCTCGCCATCAACACTATATGCCATTGCCTGTGTCACGGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTGgtgtgtttagtttggtgtgttcccaaagttttatggtgttgcatctctgttcaaaaaacttattatacttgtttcatgtttgtag
 ||||| | || ||||| || || ||  | || ||| | || ||| ||   ||||| || || |||||||| ||||||||||||||||||||||| || |||||  || ||||  |    |||||   |||   |||          || | | ||   |   ||| |  | | ||||       
GACGAGCCCGAAATCTCTCCCTCCACTATTTACGCCTTGGCATGTATCCAAGAGGGTGTTCCTTTCATCAACGGGAGCCCCCAGAACACTTTTGTCCCAGgtgtccttcgtttttt---ctcccagtttttctcggt---------ttgctaagaagtgtgtgtatgcacggtgcatggccag--

upper sequence: GRMZM2G004528_T03 (Zea mays), 5'ss of exon 5
lower sequence: EFJ27629 (Selaginella moellendorffii), 5'ss of exon 5
AACGAGGCGGAGATCTCGCCATCAACACTATATGCCATTGCCTGTGTCACGGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTGgtgtgtttagtttggtgtgttcccaaagttttatggtgttgcatctctgttcaaaaaacttattatacttgtttcatgtttgtag
 ||||| | || ||||| || || ||  | || ||| | || ||| ||   ||||| || || |||||||| ||||||||||||||||||||||| || |||||  || ||||  |    |||||   |||   |||          || | | ||   |   ||| |  | | ||||       
GACGAGCCCGAAATCTCTCCCTCCACTATTTACGCCTTGGCGTGTATCCAAGAGGGTGTTCCTTTCATCAACGGGAGCCCCCAGAACACTTTTGTCCCAGgtgtccttcgtttttt---ctcccagtttttctcggt---------ttgctaagaagtgtgtgtatgcacggtgcatggccag--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32855391|gb|CD995072.1|CD995072
EST:     GGAAGGGGTGCCATTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTG                         GGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
genomic: GGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTGgtgtgtttag ... atgtttgtagGGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
EST: gi|32856301|gb|CD995982.1|CD995982
EST:     GGGGTGCCATTCAGCAATGGGAGCCCCCAGAACACTTTTGTGCCTG                         GGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
genomic: GGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTGgtgtgtttag ... atgtttgtagGGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
EST: gi|32855713|gb|CD995394.1|CD995394
EST:     GGAAGGGGTGCCATTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTG                         GGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
genomic: GGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTGgtgtgtttag ... atgtttgtagGGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
EST: gi|6637095|gb|AW261367.1|AW261367
EST:     GGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTG                         GGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
genomic: GGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTGgtgtgtttag ... atgtttgtagGGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
EST: gi|211037209|gb|FK948218.1|FK948218
EST:     GGAGTGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTG                         GGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACTACT
genomic: GGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTGgtgtgtttag ... atgtttgtagGGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
EST: gi|91871596|gb|EB401553.1|EB401553
EST:     CTTTTGTGCCTG                         GGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
genomic: CTTTTGTGCCTGgtgtgtttag ... atgtttgtagGGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
EST: gi|13516068|gb|BG518344.1|BG518344
EST:     GGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTG                         GGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
genomic: GGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTGgtgtgtttag ... atgtttgtagGGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
EST: gi|6527007|gb|AW216231.1|AW216231
EST:     GGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTG                         GGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
genomic: GGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTGgtgtgtttag ... atgtttgtagGGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
EST: gi|6637051|gb|AW261323.1|AW261323
EST:     GGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTG                         GGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
genomic: GGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTGgtgtgtttag ... atgtttgtagGGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
EST: gi|32831002|gb|CD970680.1|CD970680
EST:     GGAAGGGGTGCCATTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTG                         GGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
genomic: GGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTGgtgtgtttag ... atgtttgtagGGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
EST: gi|32803449|gb|CD955685.1|CD955685
EST:     GGAAGGGGTGCCATTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTG                         GGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
genomic: GGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTGgtgtgtttag ... atgtttgtagGGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
EST: gi|211029038|gb|FL245284.1|FL245284
EST:     CATCAATGGGAGCCCCCAGAACACTTTTGTGCCTG                         GGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
genomic: CATCAATGGGAGCCCCCAGAACACTTTTGTGCCTGgtgtgtttag ... atgtttgtagGGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
EST: gi|31359455|gb|CD443812.1|CD443812
EST:     GGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTG                         GGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
genomic: GGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTGgtgtgtttag ... atgtttgtagGGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
EST: gi|33098850|gb|CF058810.1|CF058810
EST:     GGAAGGGGTGCCATTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTG                         GGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
genomic: GGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTGgtgtgtttag ... atgtttgtagGGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
EST: gi|32921535|gb|CF026347.1|CF026347
EST:     GGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTG                         GGCTGATTGATCTTGCTATCAAGAACAACTGCCCGATCGGTGGTGACGACT
genomic: GGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTGgtgtgtttag ... atgtttgtagGGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
EST: gi|31364344|gb|CD448699.1|CD448699
EST:     GGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTG                         GGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
genomic: GGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTGgtgtgtttag ... atgtttgtagGGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
EST: gi|32921566|gb|CF026378.1|CF026378
EST:     GGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTG                         GGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
genomic: GGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTGgtgtgtttag ... atgtttgtagGGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
EST: gi|60346856|gb|DN213829.1|DN213829
EST:     GGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTG                         GGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
genomic: GGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTGgtgtgtttag ... atgtttgtagGGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
EST: gi|21621348|gb|BQ619354.1|BQ619354
EST:     GGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTG                         GGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
genomic: GGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTGgtgtgtttag ... atgtttgtagGGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
EST: gi|32920511|gb|CF025323.1|CF025323
EST:     GGAAGGGGTGCCATTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTG                         GGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
genomic: GGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTGgtgtgtttag ... atgtttgtagGGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
EST: gi|211032313|gb|FK948194.1|FK948194
EST:     GGAGGGGGTGCCGTTCATCAATGGGAGCCCCCARAACACTTTTGTGCCTG                         GGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGKGGTGACGACT
genomic: GGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTGgtgtgtttag ... atgtttgtagGGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
EST: gi|67029746|gb|CO458495.1|CO458495
EST:     GGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTG                         GGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT
genomic: GGAGGGGGTGCCGTTCATCAATGGGAGCCCCCAGAACACTTTTGTGCCTGgtgtgtttag ... atgtttgtagGGCTGATTGATCTTGCTATCAAGAACAACTGCCTGATCGGTGGTGACGACT