1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTATGGTTGGAGCAAATATGGTCAGCTAGGGCATGGTGATTTTGAAGATCATTTAGTTCCACATAAAGTAGAAGCTTTGAAAGATAGCACTATATCCCAGgtaaatataccttgtacaaacattccgtgacatggtttcaagaacttcattttcgctttgctaggatttagaaagatgatggttccatacttccatgcac...
species | Zea mays |
transcript | GRMZM2G003565_T03 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATTTAGTTCCACATAAAGTAGAAGCTTTGAAAGATAGCACTATATCCCAG ATTTCAGGCGGCTGGAGGCATACGATGGCACTTACATCAGAGGGAAAGCTTEST: gi|194716840|gb|FK933999.1|FK933999
genomic: ATTTAGTTCCACATAAAGTAGAAGCTTTGAAAGATAGCACTATATCCCAGgtaaatatac ... tgtgatttagATTTCAGGCGGCTGGAGGCATACGATGGCACTTACATCAGAGGGAAAGCTT
EST: ATTTAGTTCCACATAAAGTAGAAGCTTTGAAAGATAGCACTATATCCCAG ATTTCAGGCGGCTGGAGGCACACGATGGCACTTACATCAGAGGGAGAGCTTEST: gi|50331209|gb|CO526335.1|CO526335
genomic: ATTTAGTTCCACATAAAGTAGAAGCTTTGAAAGATAGCACTATATCCCAGgtaaatatac ... tgtgatttagATTTCAGGCGGCTGGAGGCATACGATGGCACTTACATCAGAGGGAAAGCTT
EST: ATTTAGTTCCACATAAAGTAGAAGCTTTGAAAGATAGCACTATATCCCAG ATTTCAGGCGGCTGGAGGCATACGATGGCACTTACATCEST: gi|76919945|gb|DV167932.1|DV167932
genomic: ATTTAGTTCCACATAAAGTAGAAGCTTTGAAAGATAGCACTATATCCCAGgtaaatatac ... tgtgatttagATTTCAGGCGGCTGGAGGCATACGATGGCACTTACATC
EST: ATTTAGTTCCACATAAAGTAGAAGCTTTGAAAGATAGCACTATATCCCAG ATTTCAGGCGGCTGGAGGCATACGATGGCACTTACATCAGAGGGGAAGCTTEST: gi|211471127|gb|FL255671.1|FL255671
genomic: ATTTAGTTCCACATAAAGTAGAAGCTTTGAAAGATAGCACTATATCCCAGgtaaatatac ... tgtgatttagATTTCAGGCGGCTGGAGGCATACGATGGCACTTACATCAGAGGGAAAGCTT
EST: ATTTAGTTCCACATAAAGTAGAAGCTTTGAAAGATAGCACTATATCCCAG ATTTCAGGCGGCTGGAGGCATACGATGGCACTTACATCAGAGGGAAAGCTTEST: gi|211476174|gb|FL255694.1|FL255694
genomic: ATTTAGTTCCACATAAAGTAGAAGCTTTGAAAGATAGCACTATATCCCAGgtaaatatac ... tgtgatttagATTTCAGGCGGCTGGAGGCATACGATGGCACTTACATCAGAGGGAAAGCTT
EST: ATTTAGTTCCACATAAAGTAGAAGCTTTGAAAGATAGCACTATATCCCAG ATTTCAGGCGGCTGGAGGCATACGATGGCACTTACATCAGAGGGAAAGCTTEST: gi|211471121|gb|FL255665.1|FL255665
genomic: ATTTAGTTCCACATAAAGTAGAAGCTTTGAAAGATAGCACTATATCCCAGgtaaatatac ... tgtgatttagATTTCAGGCGGCTGGAGGCATACGATGGCACTTACATCAGAGGGAAAGCTT
EST: ATTTAGTTCCACATAAAGTAGAAGCTTTGAAAGATAGCACTATATCCCAG ATTTCAGGCGGCTGGAGGCATACGATGGCACEST: gi|29130842|gb|CB381546.1|CB381546
genomic: ATTTAGTTCCACATAAAGTAGAAGCTTTGAAAGATAGCACTATATCCCAGgtaaatatac ... tgtgatttagATTTCAGGCGGCTGGAGGCATACGATGGCAC
EST: ATTTAGTTCCACATAAAGTAGAAGCTTTGAAAGATAGCACTATATCCCAG ATTTCAGGCGGCTGGAGGCATACGATGGCACTTACATCAGAGGGAAAGCTTEST: gi|71771589|gb|DR969526.1|DR969526
genomic: ATTTAGTTCCACATAAAGTAGAAGCTTTGAAAGATAGCACTATATCCCAGgtaaatatac ... tgtgatttagATTTCAGGCGGCTGGAGGCATACGATGGCACTTACATCAGAGGGAAAGCTT
EST: ATTTAGTTCCACATAAAGTAGAAGCTTTGAAAGATAGCACTATATCCCAG ATTTCAGGCGGCTGGAGGCATACGATGGCACTTACATCAGAGGGGAAGCTTEST: gi|76283808|gb|DV023376.1|DV023376
genomic: ATTTAGTTCCACATAAAGTAGAAGCTTTGAAAGATAGCACTATATCCCAGgtaaatatac ... tgtgatttagATTTCAGGCGGCTGGAGGCATACGATGGCACTTACATCAGAGGGAAAGCTT
EST: ATTTAGTTCCACATAAAGTAGAAGCTTTGAAAGATAGCACTATATCCCAG ATTTCAGGCGGCTGGAGGCATACGATGGCACTTACATCAGAGGGAAAGCTT
genomic: ATTTAGTTCCACATAAAGTAGAAGCTTTGAAAGATAGCACTATATCCCAGgtaaatatac ... tgtgatttagATTTCAGGCGGCTGGAGGCATACGATGGCACTTACATCAGAGGGAAAGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATGGTTGGAGCAAATATGGTCAGCTAGGGCATGGTGATTTTGAAGATCATTTAGTTCCACATAAAGTAGAAGCTTTGAAAGATAGCACTATATCCCAGgtaaatataccttgtacaaacattccgtgacatggtttcaagaacttcattttcgctttgctaggatttagaaagatgatggttccatacttccatgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC