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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGCATTCAGTTCGTTGGCAATGTCATGCGTAGCAGTAGTCAGATAAGGCGGGCACACTGTTGGTTTCCTTGTGTTGATAGTGCCAGAGAACGCTGTCCgtaagttaatttcattcgttcatgcttttgtgaatcctggtacaatatttgcctttgcgtgttaataattctctctctatttatcatgttatgctcag

Basic information

species Zea mays
transcript GRMZM2G002918_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G002918_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os09g24440.1 (Oryza sativa), 5'ss of exon 3
CTGGCATTCAGTTCGTTGGCAATGTCATGCGTAGCAGTAGTCAGATAAGGCGGGCACACTGTTGGTTTCCTTGTGTTGATAGTGCCAGAGAACGCTGTCCgtaagttaatttcattcgttcatgcttttgtgaatcctggtacaatatttgcctttgcgtgttaataattctctctctatttatcatgttatgctcag
||||  || | |||  ||||||  || | | ||| |  | ||| |||||||| |||||||| |||||||||||  |||||||||| | | | |||||||||||||| ||         ||| ||| | |   |||  || |   || |||||   |||  ||||| |||| | ||| | |||  ||||  |||  |||
CTGGACTTTACTTCACTGGCAACATCTTACATAGTAACAATCAAATAAGGCGTGCACACTGCTGGTTTCCTTGCATTGATAGTGCAACACAGCGCTGTCCgtaagtgaaa-------attcttgcctctc--aattttgcttttatgtttgctggtgctggttaacaatttt-tctttgttt--catgccatgtccag