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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTACCATTCATTACTGCTACTGCTGATGGGCCAAAACACATCGAGGCAACCCTCTCGAGAGCCAAATTCGAGGAACTATGTTCAGACCTTATAGACAGgtaccattctatcagtatttctgtgctcactgctttttgaaaattgtctctctataattccatatgatctatgtatgagagatttttcaaaggctttgctgactttcattctggtgacag

Basic information

species Zea mays
transcript GRMZM2G001500_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G001500_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os12g14070.1 (Oryza sativa), 5'ss of exon 5
CCTACCATTCATTACTGCTACTGCTGATGGGCCAAAACACATCGAGGCAACCCTCTCGAGAGCCAAATTCGAGGAACTATGTTCAGACCTTATAGACAGgtaccattctatcagtatttctgtgctcactgctttttgaaaattgtctctctataattccatatgatctatgtatgagagatttttcaaaggctttgctgactttcattctggtgacag
| | || ||||| |||||||||||||||||||| |||||||||||| |||| ||||| ||||||||||| ||||| |||||||| ||||| || || |||||  ||   ||    |||          ||| | | | ||   | |  ||    ||    || ||   | | |     | ||||||  |||||||  || |  |   |  |  ||| ||
CTTGCCTTTCATAACTGCTACTGCTGATGGGCCTAAACACATCGAGACAACTCTCTCCAGAGCCAAATTTGAGGAGCTATGTTCGGACCTCATTGATAGgtaaaat---atggacattct-------gctgatatat-aagcctattgcttaggaaaatgatttgcattttctc----aaatttttttaaggcttgactaatatgtttcttattgatag

upper sequence: GRMZM2G001500_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv17s0000g03310.t01 (Vitis vinifera), 5'ss of exon 5
CCTACCATTCATTACTGCTACTGCTGATGGGCCAAAACACATCGAGGCAACCCTCTCGAGAGCCAAATTCGAGGAACTATGTTCAGACCTTATAGACAGgta-------ccattctatcagtatttctgtgctcactgctttttga----aaattgtct----ctctataatt-----ccatatgatctatgtatgaga----gatttttcaaaggctttgctgacttt-cattctggtgacag------------------------------------------------
| | || ||||||||||| ||||| ||||| || |||||||||||| | |||||  | || |||||||| |||||| ||||||| ||| |  | || |||||          ||| | |  |  ||||   ||  ||||||  ||     ||| ||  |    || || ||||        | |  |||| | |  | |     | || | |    | |||  | | || || | | ||||| |                                                
CTTGCCGTTCATTACTGCCACTGCAGATGGACCCAAACACATCGAGACTACCCTTACAAGGGCCAAATTTGAGGAATTATGTTCTGACTTACTTGATAGgtaaagaattttgttccaaccatgcttct-cactagctgcttcatgttattaaactggttggtgctatacaattagtggttgtttactctaggcacaaaacttgaagttgttattttccttgtggtccttgcactgttgtgactgtgttggttttaaagttttatgtctcatgtctgagaattattttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91875430|gb|EB405387.1|EB405387
EST:     ACCCTCTCGAGAGCCAAATTCGAGGAACTATGTTCAGACCTTATAGACAG                         GCTTAAAACTCCTGTTAATAATGCACTGAGAGAATGCCAAGTTGTCTCTCA
genomic: ACCCTCTCGAGAGCCAAATTCGAGGAACTATGTTCAGACCTTATAGACAGgtaccattct ... ctggtgacagGCTTAAAACTCCTGTTAATAATGCACTGAGAGA-TGCCAAGTTGTCTCTCA