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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGGCAAATTGAGGGAAGAAATCAATGAAGATATGTCTATCGCAAAAGCCATCGCAATTGTTATGGCTAGAAATCCGCACTTGAGgtttgaactaatctgatttctgcctagtgcgctggtcagcgcaaacgttccagtcattttaactgtgctttctacgtgttcaatacag

Basic information

species Zea mays
transcript GRMZM2G000052_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G000052_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os04g53190.1 (Oryza sativa), 5'ss of exon 7
ACTGGCAAATTGAGGGAAGAAATCAATGAAGATATGTCTATCGCAAAAGCCATCGCAATTGTTATGGCTAGAAATCCGCACTTGAGgtttgaactaatctgatttctgccta-gtgcgctggtcagcgcaaacgttccagtcattttaactgtgctttctacgtgttcaatacag
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ACTGGCAAACTGAGGGAAGAAACTAAGGAAGACATTTCTATTGCGAAGGCCATTGCAATTGTTATGGAGAGAAATCCACACTTGAGgtttgtacca-tccaatttctgcccatgtgcataggttatcctgatc-ttttggtcattttgcctgacctgtc--cttgttcacaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71764900|gb|DR962837.1|DR962837
EST:     TCTATCGCAAAAGCCATCGCAATTGTTATGGCTAGAAATCCGCACTTGAG                         GCAAGAAGGGATTGCTCATGAGGTTCTTCAGTGGTATTTGTGCCGTATGGA
genomic: TCTATCGCAAAAGCCATCGCAATTGTTATGGCTAGAAATCCGCACTTGAGgtttgaacta ... ttcaatacagGCAAGAAGGGATTGCTCATGAGGTTCTTCAGTGGTATTTGTGCCGTATGGA
EST: gi|60356234|gb|DN223207.1|DN223207
EST:     TCTATCGCAAAAGCCATCGCAATTGTTATGGCTAGAAATCCGCACTTGAG                         GCAAGAAGGGATTGCTCATGAGGTTCTTCAGTGGTATTTGTGTCGTATGGA
genomic: TCTATCGCAAAAGCCATCGCAATTGTTATGGCTAGAAATCCGCACTTGAGgtttgaacta ... ttcaatacagGCAAGAAGGGATTGCTCATGAGGTTCTTCAGTGGTATTTGTGCCGTATGGA
EST: gi|211300846|gb|FL383949.1|FL383949
EST:     TCTATCGCAAAAGCCATCGCAATTGTTATGGCTAGAAATCCGCACTTGAG                         GCAAGAAGGGATTGCTCATGAGGTTCTTCAGTGGTA
genomic: TCTATCGCAAAAGCCATCGCAATTGTTATGGCTAGAAATCCGCACTTGAGgtttgaacta ... ttcaatacagGCAAGAAGGGATTGCTCATGAGGTTCTTCAGTGGTA
EST: gi|211514296|gb|FL420360.1|FL420360
EST:     TCTATCGCAAAAGCCATCGCAATTGTTATGGCTAGAAATCCGCACTTGAG                         GCAAGAAGGGATTGCTCATGAGGTTCTTCAGTGGTATTTGTGTCGTATGGA
genomic: TCTATCGCAAAAGCCATCGCAATTGTTATGGCTAGAAATCCGCACTTGAGgtttgaacta ... ttcaatacagGCAAGAAGGGATTGCTCATGAGGTTCTTCAGTGGTATTTGTGCCGTATGGA