1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGGGTAACTATGGCTGGGTATGGTTTCGGGCTCCCGATCAGCCGACTCTACGCTCGGTATTTTGGCGGCGACCTGCAAATCATCTCGATGGAAGGATACGgtatgccatcataatatttcaattcccgcatcagacgtcgggacatatatatgactaatgtttcttttcggtcgtgtag
species | Zea mays |
transcript | AC217975.3_FGT001 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CGCTCGGTATTTTGGCGGCGACCTGCAAATCATCTCGATGGAAGGATACG GTACCGATGCTTACCTCCACTTGTCGCGGCTGGGAGATTCAGAGGAGCCCTEST: gi|76915117|gb|DV165832.1|DV165832
genomic: CGCTCGGTATTTTGGCGGCGACCTGCAAATCATCTCGATGGAAGGATACGgtatgccatc ... ggtcgtgtagGTACCGATGCTTACCTCCACTTGTCGCGGCTGGGAGATTCAGAGGAGCCCT
EST: CGCTCGGTATTTTGGCGGCGACCTGCAAATCATCTCGATGGAAGGATACG GTACCGATGCTTACCTCCACTTGTCGCGGCTGGGAGATTCAGAGGAGCCCTEST: gi|76292667|gb|DV032235.1|DV032235
genomic: CGCTCGGTATTTTGGCGGCGACCTGCAAATCATCTCGATGGAAGGATACGgtatgccatc ... ggtcgtgtagGTACCGATGCTTACCTCCACTTGTCGCGGCTGGGAGATTCAGAGGAGCCCT
EST: CGCTCGGTATTTTGGCGGCGACCTGCAAATCATCTCGATGGAAGGATACG GTACCGATGCTTACCTCCACTTGTCGCGGCTGGGAGATTCAGAGGAGCCCTEST: gi|74244772|gb|DT652686.1|DT652686
genomic: CGCTCGGTATTTTGGCGGCGACCTGCAAATCATCTCGATGGAAGGATACGgtatgccatc ... ggtcgtgtagGTACCGATGCTTACCTCCACTTGTCGCGGCTGGGAGATTCAGAGGAGCCCT
EST: CGCTCGGTATTTTGGCGGCGACCTGCAAATCATCTCGATGGAAGGATACG GTACCGATGCTTACCTCCACTTGTCGCGGCTGGGAGATTCAGAGGAGCCCTEST: gi|148943884|gb|EC888964.2|EC888964
genomic: CGCTCGGTATTTTGGCGGCGACCTGCAAATCATCTCGATGGAAGGATACGgtatgccatc ... ggtcgtgtagGTACCGATGCTTACCTCCACTTGTCGCGGCTGGGAGATTCAGAGGAGCCCT
EST: CGCTCGGTATTTTGGCGGCGACCTGCAAATCATCTCGATGGAAGGATACG GTACCGATGCTTACCTCCCCTTGTCGCGGCTGGGAGATTCAGAGGAGCCCTEST: gi|71442066|gb|DR823116.1|DR823116
genomic: CGCTCGGTATTTTGGCGGCGACCTGCAAATCATCTCGATGGAAGGATACGgtatgccatc ... ggtcgtgtagGTACCGATGCTTACCTCCACTTGTCGCGGCTGGGAGATTCAGAGGAGCCCT
EST: CGCTCGGTATTTTGGCGGCGACCTGCAAATCATCTCGATGGAAGGATACG GTACCGATGCTTACCTCCACTTGTCGCGGCTGGGAGATTCAGAGGAGCCCTEST: gi|149112845|gb|EE295659.2|EE295659
genomic: CGCTCGGTATTTTGGCGGCGACCTGCAAATCATCTCGATGGAAGGATACGgtatgccatc ... ggtcgtgtagGTACCGATGCTTACCTCCACTTGTCGCGGCTGGGAGATTCAGAGGAGCCCT
EST: CGCTCGGTATTTTGGCGGCGACCTGCAAATCATCTCGATGGAAGGATACG GTACCGATGCTTACCTCCACTTGTCGCGGCTGGGAGATTCAGAGGAGCCCT
genomic: CGCTCGGTATTTTGGCGGCGACCTGCAAATCATCTCGATGGAAGGATACGgtatgccatc ... ggtcgtgtagGTACCGATGCTTACCTCCACTTGTCGCGGCTGGGAGATTCAGAGGAGCCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGGTAACTATGGCTGGGTATGGTTTCGGGCTCCCGATCAGCCGACTCTACGCTCGGTATTTTGGCGGCGACCTGCAAATCATCTCGATGGAAGGATACGgtatgccatcataatatttcaattcccgcatcagacgtcgggacatatatatgactaatgtttcttttcggtcgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG