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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGTTTGGGTATCATTCCGCAAGATCCGACACTCTTTCAAGGAACCATAAGATATAATCTAGACCCTCTTGGGCAATTCTCTGATCAACAAATATGGGAGgtaagatatcttgtaataaacatggctattcatgcttttgctagccctaatcattgtttagatttagttatgcaacttttggaatctaatggtcatgtga...

Basic information

species Zea mays
transcript AC206266.3_FGT001
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G111903_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os11g05700.1 (Oryza sativa), 5'ss of exon 7
ACGTTTGGGTATCATTCCGCAAGATCCGACACTCTTTCAAGGAACCATAAGATATAATCTAGACCCTCTTGGGCAATTCTCTGATCAACAAATATGGGAGgtaagatatcttgtaataaacatggctattcatgcttttgctagccctaatcattgtttagatttagttat-----gcaacttttggaatctaatggtcatgtga
| ||||||| || |||||||||||||| ||||| || || || ||  ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| || |   |||    | |  |  ||||| |  |||  |||   || |||    || | |    |||      | ||   ||    || ||    ||  || 
ATGTTTGGGCATTATTCCGCAAGATCCAACACTTTTCCAGGGTACTGTAAGATACAATCTAGACCCTCTTGGGCAATTCTCGGATCAACAAATATGGGAGgtaatatgt---gtaccctataatgtaattcacgtgttt-ttagttgtattcaacaattgggtcagcttaccgtgagaaaagattactttcaaagaaccagatg-

upper sequence: GRMZM2G111903_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os06g06440.1 (Oryza sativa), 5'ss of exon 8
ACGTTTGGGTATCATTCCGCAAGATCCGACACTCTTTCAAGGAACCATAAGATATAATCTAGACCCTCTTGGGCAATTCTCTGATCAACAAATATGGGAGgtaagatatcttgtaataaacatggctattcatgcttttgctagccctaatcattgtttagat---ttagttatgc--aacttttggaatc-taatggtcatgtga
||| ||||| |||||||| |||||||| ||||| || || || ||  ||||||| ||||||||||| |||||||||||||| |||||||| |||||||||||||||| |   |||    |||    ||||||  |||||  ||    |||||| || ||||||    |    |||    | | ||| |||| |    ||| | |  
ACGGTTGGGCATCATTCCACAAGATCCAACACTTTTCCAGGGTACTTTAAGATACAATCTAGACCCCCTTGGGCAATTCTCAGATCAACAGATATGGGAGgtaagatgt---gtaccctacacaattattca--ctttttttaattgtaatcaatgattagataagcttaccatgatgtattgttgaaatcatggaagtcgttta-