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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTACTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAATTTTAGGACTTTCTCTCCCTATGATTTGGACACGCCAACCAATACTGgtaagtaacttggccatgaacagttagaatggtgcacgccaaccaatactgatatgtataattatagctatcgggagagggtcattcgatgtatgaaatg...

Basic information

species Zea mays
transcript AC205703.4_FGT004
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC205703.4_FGT004 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os10g32880.1 (Oryza sativa), 5'ss of exon 13
ACTACTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAATTTTAGGACTTTCTCTCCCTATGATTTGGACACGCCAACCAATACTGgtaagtaacttggc----------catgaacagtta-----gaatggtgcacgccaaccaatactgatatgtataattatagctatcgggagagggtcattcgatgtatgaaatg
||| ||||||  ||||| || ||||||||||||||||| ||||||||||| ||||||||  | || || ||||| |  ||||||||||| ||| |||||||| ||||| ||          ||   ||||| |     |||||||||| |     | ||     | ||||||  |||||| | |  | |||  |   | ||           
ACTGCTGCTCTCGATGGAGTCAAGCTTTGGGATCTTCGAAAATTAAGAAACTTTAGGACGATATCACCTTATGACTCAGACACGCCAACAAATTCTGgtaaggaactttgcgcatgctccacactcacagtaaattgtgaatggtgcatgtgcttcgatg----tgtgtatagatatagccaacaagcgagattatgttga-----------

upper sequence: AC205703.4_FGT004 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA10G26870.1 (Glycine max), 5'ss of exon 15
ACTACTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAATTTTAGGACTTTCTCTCCCTATGATTTGGACACGCCAACCAATACTGgtaagtaacttggcc-atgaacagttagaatggtgcacgccaaccaatactgatatgtataattatagctatcgggagagggtcattcgatgtatgaaatg--
||| ||||||||||||||||||||||||||||||| |||||||| |  || || |||| |||  |||| |||||||  || || || || |   | ||||   |  ||  |   |  |  |  | | |     |    |   ||||| | | |    | || ||  ||     |  || | | |   | | |        
ACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAATTGAAGAACTTCAGGAATTTTGCTCCATATGATTCAGAAACACCGACGAGCTCCGgtattcattttcacttgttgatggccata-taacctat-ttatataataccggt-taggaagttgtacatacttcaaagggtttactatctttttagtcctta

upper sequence: AC205703.4_FGT004 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA20G21330.1 (Glycine max), 5'ss of exon 15
ACTACTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAATTTTAGGACTTTCTCTCCCTATGATTTGGACACGCCAACCAATACTGgtaagtaacttggccatgaacagttagaatggtgcacgccaaccaatactgatatgtataattatagctatcgggagaggg--tcattcga----tgtatgaaatg---
||| ||||||||||||||||||||||||||||||| |||||| | |  || || |||| |||  |||| ||||||| ||| || ||||| |   | ||||   |  ||  |  |||   |  |  ||     |     |   |||||| | |    | || ||  |||    | |||   ||||   |    ||| ||   ||   
ACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAACTGAAGAACTTCAGGAATTTTGCTCCATATGATTCGGAAACACCAACGAGCTCCGgtattcattttcact-tgat--ggcaatataacctatatttatatatactggt-taagaagttgtacatatttcaaaaggccttcatcttaattctgtgtgtcttgcag

upper sequence: AC205703.4_FGT004 (Zea mays), 5'ss of exon 5
lower sequence: Vv05s0049g01840.t01 (Vitis vinifera), 5'ss of exon 15
ACTACTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAATTTTAGGACTTTCTCTCCCTATGATTTGGACACGCCAACCAATACTGgtaagtaacttggccatgaacagttagaatggtgcacgccaaccaatactgatatgtataa-ttatagctatcgggagagggtcattcgatgtatgaaatg
||| | |||||||||||||||||||| |||||||| || ||||| || |||||  |||| ||  | || |||||||   | ||  |||| ||  |||||| |||    |   ||  || |      |    |   | ||   ||   | | | |  || || |   ||  |||  |  ||        ||  ||||| 
ACTGCAGCTCATGATGGTGTTAAGCTGTGGGATCTACGAAAATTGAGGAATTTCCGGACCTTTACACCATATGATTCAAATACAGCAACAAACTCTGgtatgtattcagtttattcaccgagtttttaaaccttacgaagagattaagctgtattaaacttctgattaagggggaaaagtttaaactagttggaaat-