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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCATCTCCAAGGAGGAGCTGGAGCAGGCGCTCAAGGAGAAGGGGCTCCTGGACGGCAGGGACATCAAGGACATCATCTCGGAGGTCGACGCCGACAACgtaagtcgatcggtcgtcgttgcatgcatggtgatgatgatggtgagctctcggccgtcggctgatcggctgttgttgttggaatcgttgcgcag

Basic information

species Zea mays
transcript AC203294.3_FGT001
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC203294.3_FGT001 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g59360.1 (Oryza sativa), 5'ss of exon 7
GTGCATCTCCAAGGAGGAGCTGGAGCAGGCGCTCAAGGAGAAGGGGCTCCTGGACGGCAGGGACATCAAGGACATCATCTCGGAGGTCGACGCCGACAACgtaag------------tcgatcggtc-----gtcgttgcatgcatggtg----atga-tga--tggtga-gctctcggccgtcggctgatcggctgttgttgttggaatcgt-tgcgcag
 ||||| || ||||||||||| ||||| ||||| | |||||| || || || || ||||| |||||||| |||||||| || || ||||||||||| |||||||             ||  | | ||      || || |   |||  |     | || |||   ||  | ||    |  |   |       | ||  | | | ||||||  |    ||||
CTGCATTTCGAAGGAGGAGCTCGAGCAAGCGCTGAGGGAGAAAGGTCTTCTCGATGGCAGAGACATCAAAGACATCATATCAGAAGTCGACGCCGATAACgtaaaatcgcagcagattcctttgctctacaaatcatttctaacattctacaacacgagtgacacggcaatgccaatgatcaatgtagagctgactaatttcgctggaattttacctgcag