1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGGTCTTGCATTTGCACAAGAACGTGGATGTCTCTTTGTCGAGAGTAGTGCTAAAACAAGAGAAAACGTGGAAAAATGTTTTGAAGAGCTTGCATTAAAGgtactgcataaaccagaacaatacttaatatcaaaagcttatctctttacccttcataccattcaaatctaccttccaatagctccagaaaattagattt...
species | Zea mays |
transcript | AC149818.2_FGT001 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTAAAACAAGAGAAAACGTGGAAAAATGTTTTGAAGAGCTTGCATTAAAG ATTCTCCAGGTTCCCAGTCTCTTGGAGGAAGGTTCTTCGGTTGTTAAGAGGEST: gi|71435756|gb|DR816806.1|DR816806
genomic: CTAAAACAAGAGAAAACGTGGAAAAATGTTTTGAAGAGCTTGCATTAAAGgtactgcata ... tggtgtacagATTCTCCAGGTTCCCAGTCTATTGGAGGAAGGTTCTTCGGTTGTTAAGAGG
EST: CTAAAACAAGAGAAAACGTGGAAAAATGTTTTGAAGAGCTTGCATTAAAG ATTCTCCAGGTTCCCAGTCTATTGGAGGAAGGTTCTTCGGTTGTTAAGAGGEST: gi|8401358|gb|BE056992.1|BE056992
genomic: CTAAAACAAGAGAAAACGTGGAAAAATGTTTTGAAGAGCTTGCATTAAAGgtactgcata ... tggtgtacagATTCTCCAGGTTCCCAGTCTATTGGAGGAAGGTTCTTCGGTTGTTAAGAGG
EST: CTAAAACAAGAGAAAACGTGGAAAAATGTTTTGAAGAGCTTGCATTAAAG ATTCTCCAGGTTCCCAGTCTATTGGAGGAAGGTTCTTCGGTTGTTAAGAGGEST: gi|38229757|gb|CF920070.1|CF920070
genomic: CTAAAACAAGAGAAAACGTGGAAAAATGTTTTGAAGAGCTTGCATTAAAGgtactgcata ... tggtgtacagATTCTCCAGGTTCCCAGTCTATTGGAGGAAGGTTCTTCGGTTGTTAAGAGG
EST: CTAAAACAAGAGAAAACGTGGAAAAATGTTTTGAAGAGCTTGCATTAAAG ATTCTCCAGGTTCCCAGTCTATTGGAGGAAGGTTCTTCGGTTGTTAAGAGEST: gi|6095558|gb|AW120225.1|AW120225
genomic: CTAAAACAAGAGAAAACGTGGAAAAATGTTTTGAAGAGCTTGCATTAAAGgtactgcata ... tggtgtacagATTCTCCAGGTTCCCAGTCTATTGGAGGAAGGTTCTTCGGTTGTTAAGAG
EST: CTAAAACAAGAGAAAACGTGGAAAAATGTTTTGAAGAGCTTGCATTAAAG ATTCTCCAGGTTCCCAGTCTATTGGAGGAAGGTTCTTEST: gi|101382471|gb|EB813291.1|EB813291
genomic: CTAAAACAAGAGAAAACGTGGAAAAATGTTTTGAAGAGCTTGCATTAAAGgtactgcata ... tggtgtacagATTCTCCAGGTTCCCAGTCTATTGGAGGAAGGTTCTT
EST: CTAAAACAAGAGAAAACGTGGAAAAATGTTTTGAAGAGCTTGCATTAAAG ATTCTCCAGGTTCCCAGTCTATTGGAGGAAGGTTCTTCGGTTGTTAAGAGG
genomic: CTAAAACAAGAGAAAACGTGGAAAAATGTTTTGAAGAGCTTGCATTAAAGgtactgcata ... tggtgtacagATTCTCCAGGTTCCCAGTCTATTGGAGGAAGGTTCTTCGGTTGTTAAGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGTCTTGCATTTGCACAAGAACGTGGATGTCTCTTTGTCGAGAGTAGTGCTAAAACAAGAGAAAACGTGGAAAAATGTTTTGAAGAGCTTGCATTAAAGgtactgcataaaccagaacaatacttaatatcaaaagcttatctctttacccttcataccattcaaatctaccttccaatagctccagaaaattagattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccagaaaa