1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTTTACACAAAATTAGAAGAAAAACGCAAGGCTTTGGAAGAGGAGAAACTCCAAGCAGAGGCCAGAAAGAGGgtaagtctgctactgtttattttatggtattgcctgaatattagtgtctgttttgtttgtggcatcatgaagagcactcatttttttttgcaaaattact...
species | Zea mays |
transcript | AC148167.6_FGT001 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AACGCAAGGCTTTGGAAGAGGAGAAACTCCAAGCAGAGGCCAGAAAGAGG GAAGAGGAAGAAGAAGCTCTAAGACCACTGAGGAAGAACTTGGTCGTCEST: gi|21626294|gb|BQ621215.1|BQ621215
genomic: AACGCAAGGCTTTGGAAGAGGAGAAACTCCAAGCAGAGGCCAGAAAGAGGgtaagtctgc ... ttttttctagGAAGAGGAAGAAGAAGCTCTAAGACAACTGAGGAAGAACTTGGTCGTC
EST: AACGCAAGGCTGTGGAAGAGGAGAAACTCCAAGCAGAGGCCAGAAAGAGG GAAGAGGAAGAAGAAGCTCTAAGACAACTGAGGAAGAACTTGGTCGTCCGAEST: gi|21626164|gb|BQ621085.1|BQ621085
genomic: AACGCAAGGCTTTGGAAGAGGAGAAACTCCAAGCAGAGGCCAGAAAGAGGgtaagtctgc ... ttttttctagGAAGAGGAAGAAGAAGCTCTAAGACAACTGAGGAAGAACTTGGTCGTCCGA
EST: GCAGAGGCCAGAAAGAGG GAAGAGGAAGAAGAAGCTCTAAGACAACTGAGGAAGAACTTGGTCGTCCGAEST: gi|26457346|gb|CA828929.1|CA828929
genomic: GCAGAGGCCAGAAAGAGGgtaagtctgc ... ttttttctagGAAGAGGAAGAAGAAGCTCTAAGACAACTGAGGAAGAACTTGGTCGTCCGA
EST: AACGCAAGGCTTTGGAAGAGGAGAAACTCCAAGCAGAGGCCAGAAAGAGG GAAGTAGGAAGAAGAAGCTCTAAGACAACTGAGGAAGAACTTGGTCGTCCGEST: gi|148968362|gb|EE019509.2|EE019509
genomic: AACGCAAGGCTTTGGAAGAGGAGAAACTCCAAGCAGAGGCCAGAAAGAGGgtaagtctgc ... ttttttctagGAAG-AGGAAGAAGAAGCTCTAAGACAACTGAGGAAGAACTTGGTCGTCCG
EST: AACGCAAGGCTTTGGAAGAGGAGAAACTCCAAGCAGAGGCCAGAAAGAGG GAAGAGGAAGAAGAAGCTCTAAGACAACTGAGGAAGAACTTGGTCGTCEST: gi|148929700|gb|EC876422.2|EC876422
genomic: AACGCAAGGCTTTGGAAGAGGAGAAACTCCAAGCAGAGGCCAGAAAGAGGgtaagtctgc ... ttttttctagGAAGAGGAAGAAGAAGCTCTAAGACAACTGAGGAAGAACTTGGTCGTC
EST: AACGCAAGGCTTTGGGAGAGGAGAAACTCCAAGCAGAGGCCAGAAAGAGG GAAGAGGAAGAEST: gi|22472914|gb|BU037394.1|BU037394
genomic: AACGCAAGGCTTTGGAAGAGGAGAAACTCCAAGCAGAGGCCAGAAAGAGGgtaagtctgc ... ttttttctagGAAGAGGAAGA
EST: AACGCAAGGCTTTGGAAGAGGAGAAACTCCAAGCAGAGGCCAGAAAGAGG GAAGAGGAAGAAGAAGCTCTAAGACAACTGAGGAAGAACTTGGTCGTCCGAEST: gi|211410393|gb|FL027532.1|FL027532
genomic: AACGCAAGGCTTTGGAAGAGGAGAAACTCCAAGCAGAGGCCAGAAAGAGGgtaagtctgc ... ttttttctagGAAGAGGAAGAAGAAGCTCTAAGACAACTGAGGAAGAACTTGGTCGTCCGA
EST: AACGCAAGGCTTTGGAAGAGGAGAAACTCCAAGCAGAGGCCAGAAAGAGG GAAGAGGAAGAAGAAGCTCTAAGACAACTGAGGAAGAACTTGGTCGTCCGAEST: gi|22545951|gb|BU098310.1|BU098310
genomic: AACGCAAGGCTTTGGAAGAGGAGAAACTCCAAGCAGAGGCCAGAAAGAGGgtaagtctgc ... ttttttctagGAAGAGGAAGAAGAAGCTCTAAGACAACTGAGGAAGAACTTGGTCGTCCGA
EST: AACGCAAGGCTTTGGAAGAGGAGAAACTCCAAGCAGAGGCCAGAAAGAGG GAAGAGGAAGAAGAAGCTCTAAGACAACTGAGGAAGAACTTGGTCGTCCGAEST: gi|22819470|gb|BU499560.1|BU499560
genomic: AACGCAAGGCTTTGGAAGAGGAGAAACTCCAAGCAGAGGCCAGAAAGAGGgtaagtctgc ... ttttttctagGAAGAGGAAGAAGAAGCTCTAAGACAACTGAGGAAGAACTTGGTCGTCCGA
EST: AACGCAAGGCTTTGGAAGAGGAGAAACTCCAAGCAGAGGCCAGAAAGAGG GAAGAGGAAGAAGAAGCTCTAAGACAACTGAGGAAGAACTTGGTCGTCCGAEST: gi|22472889|gb|BU037369.1|BU037369
genomic: AACGCAAGGCTTTGGAAGAGGAGAAACTCCAAGCAGAGGCCAGAAAGAGGgtaagtctgc ... ttttttctagGAAGAGGAAGAAGAAGCTCTAAGACAACTGAGGAAGAACTTGGTCGTCCGA
EST: AACGCAAGGCTTTGGAAGAGGAGAAACTCCAAGCAGAGGCCAGAAAGAGG GAAGAGGAAGAAGAAGCTCTAAGACAACTGAGGAAGAACTTGGTCGTCCGA
genomic: AACGCAAGGCTTTGGAAGAGGAGAAACTCCAAGCAGAGGCCAGAAAGAGGgtaagtctgc ... ttttttctagGAAGAGGAAGAAGAAGCTCTAAGACAACTGAGGAAGAACTTGGTCGTCCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTACACAAAATTAGAAGAAAAACGCAAGGCTTTGGAAGAGGAGAAACTCCAAGCAGAGGCCAGAAAGAGGgtaagtctgctactgtttattttatggtattgcctgaatattagtgtctgttttgtttgtggcatcatgaagagcactcatttttttttgcaaaattact
- - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG