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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGACATACTACAGATTCAGATGGCTCTGTTCAATTTGTTAAGAGGCACACTAGTGTGAAATCTGCAATATTTGGTTCAATAAAGATACTAACTGTTGCGgtatgtaatggatgcttttagtacattgtagacttatttttttgttaaatcttatattgctgaatcatctag

Basic information

species Zea mays
transcript GRMZM5G892495_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G892495_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA15G18180.1 (Glycine max), 5'ss of exon 13
AGGACATACTACAGATTCAGATGGCTCTGTTCAATTTGTTAAGAGGCACACTAGTGTGAAATCTGCAATATTTGGTTCAATAAAGATACTAACTGTTGCGgtatgta-----atggatgctt-----ttagtacattgtagacttatttt--------tttgttaaatcttatattgctgaatc----atctag-----------------------------
 || ||||||| | |  ||||||| || ||||||||| |     |  | ||||  ||      ||| ||   |||| ||||||||||| |||||||||||||||||      ||  || |||       ||  |||  |||    | ||         | | |  |   ||||||| | || |     |||||                              
TGGGCATACTAAAAACCCAGATGGGTCGGTTCAATTTATAGCAGGCAAGACTAAAGTTGGTGATGCTATTGATGGTGCAATAAAGATAATAACTGTTGCGgtatgtgctatgataaatacttgattaccagagcatgctaggtgcaattaaagatgtgtgtatccatatttatatttcagactttaatatctatgtagtgataataacccaatgaatatatag