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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAAGAGTCCAAGAGCGGTTCTTTGTTTGGAGGTTTTCCATCCCTGGAGGAACGAGATAAGTCTTATGACATAAAAGACTCGATGACTGTACATTGTGGgtatgcctatacatttcatatgatttatctcgagatcatgtaatggtcgtctacaattatcagtatctcttttgctgtagctaacctactgtttgtttccag

Basic information

species Zea mays
transcript GRMZM5G891056_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G891056_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g19870.1 (Oryza sativa), 5'ss of exon 3
CCAAAGAGTCCAAGAGCGGTTCTTTGTTTGGAGGTTTTCCATCCCTGGAGGAACGAGATAAGTCTTATGACATAAAAGACTCGATGACTGTACATTGTGGgtatgcctatacatttcatatgattta---tctcgagatc-atgtaatggtcgtctaca--------attatcagtatctct------tttgc--tgtagctaacct--actgtttgtttccag
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CAAAAGAGTCAAACCACGGTTCTTTGTTTGGAGGTTATCCATCATTGGAAGAGCGAGACAAGTCTTATGACATAAAAGACTCAATGACGGTTCATTGTGGgtatgtttacatagctcatctgctttagcttctgcacatctatatgataactatctacagaagtacaaatattaatgcattttaatagtttacaatgtaactgaactttactgcat-ttttcag