1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GATATCTATTGCTTGAATGCTGATGGGTCTCTGTTTGATGCTGCACTTATTTCAGCAGTGGCTGCCTTCACACATTgtaggttccttttctttcactgtacatatggtcatgctaccctcccgctatctcattttgtgcaatatggaaatatcactatcatacaatgctgctgttc...
species | Zea mays |
transcript | GRMZM5G886044_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTCTCTGTTTGATGCTGCACTTATTTCAGCAGTGGCTGCCTTCACACATT TGGAGATTCCTTTAGTTTCTGTTGGTGATGATGGTAGATTATTTACTGTTGEST: gi|76011108|gb|DT938278.1|DT938278
genomic: GTCTCTGTTTGATGCTGCACTTATTTCAGCAGTGGCTGCCTTCACACATTgtaggttcct ... atttttgcagTGGAGATTCCTTTAGTTTCTGTTGGTGATGATGGTAGATTATTTACTGTTG
EST: GTCTCTGTTTGATGCTGCACTTATTTCAGCAGTGGCTGCCTTCACACATT TGGAGATTCCTTTAGTTTCTGTTGGTGATGATGGTAGATTATTTACTGTTGEST: gi|74244352|gb|DT652266.1|DT652266
genomic: GTCTCTGTTTGATGCTGCACTTATTTCAGCAGTGGCTGCCTTCACACATTgtaggttcct ... atttttgcagTGGAGATTCCTTTAGTTTCTGTTGGTGATGATGGTAGATTATTTACTGTTG
EST: GTCTCTGTTTGATGCTGCACTTATTTCAGCAGTGGCTGCCTTCACACATT TGGAGATTCCTTTAGTTTCTGTTGGTGATGATGGTAGATTATTTACTGTTGEST: gi|60355569|gb|DN222542.1|DN222542
genomic: GTCTCTGTTTGATGCTGCACTTATTTCAGCAGTGGCTGCCTTCACACATTgtaggttcct ... atttttgcagTGGAGATTCCTTTAGTTTCTGTTGGTGATGATGGTAGATTATTTACTGTTG
EST: CACTTATTTCAGCAGTGGCTGCCTTCACACATT TGGAGATTCCTTTAGTTTCTGTTGGTGATGATGGTAGATTATTTACTGTTG
genomic: CACTTATTTCAGCAGTGGCTGCCTTCACACATTgtaggttcct ... atttttgcagTGGAGATTCCTTTAGTTTCTGTTGGTGATGATGGTAGATTATTTACTGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATATCTATTGCTTGAATGCTGATGGGTCTCTGTTTGATGCTGCACTTATTTCAGCAGTGGCTGCCTTCACACATTgtaggttccttttctttcactgtacatatggtcatgctaccctcccgctatctcattttgtgcaatatggaaatatcactatcatacaatgctgctgttc
- - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctccc