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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGGAATGCTAAATTTGAAGGACCTCTGTTTGATCACTGGGAAGGCTTCTTGGCTAGCGTACCTGgtaatatatcttggttgactcattgatagcttcagttgtggacaaaacagtgcctttgacaaggattcactgttaattactacagggatgtcaaggaatc...

Basic information

species Zea mays
transcript GRMZM5G886044_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G886044_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os11g20689.1 (Oryza sativa), 5'ss of exon 4
TTCTGGAATGCTAAATTTGAAGGACCTCTGTTTGATCACTGGGAAGGCTTCTTGGCTAGCGTACCTGgtaatatatcttggttgactcattgatagcttcagtt-gtggacaaaacagtgcctttgacaaggattcactgttaattactacagg-gatgtcaaggaatc--
 || || ||||||||||||||||| ||||||||||||| ||||||||| |||||| |||| |||||||||||      || ||   | |||| |  ||||  || ||       || | || | |  |||  | |||   | ||   || ||   ||  || ||   |   
CTCAGGGATGCTAAATTTGAAGGAGCTCTGTTTGATCAGTGGGAAGGCATCTTGGTTAGCATACCTGgtaat---cactgatttcattattggttccttctctttgtaaggcttactgggcatctc-caataagtcaaattgaaaagcttcacctgaaatctagtcgtgat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71432635|gb|DR813685.1|DR813685
EST:     TGAAGGACCTCTGTTTGATCACTGGGAAGGCTTCTTGGCTAGCGTACCTG                         GATATCTATTGCTTGAATGCTGATGGGTCTCTGTTTGATGCTGCACTTATT
genomic: TGAAGGACCTCTGTTTGATCACTGGGAAGGCTTCTTGGCTAGCGTACCTGgtaatatatc ... acttttgcagGATATCTATTGCTTGAATGCTGATGGGTCTCTGTTTGATGCTGCACTTATT
EST: gi|76011108|gb|DT938278.1|DT938278
EST:     TGAAGGACCTCTGTTTGATCACTGGGAAGGCTTCTTGGCTAGCGTACCTG                         GATATCTATTGCTTGAATGCTGATGGGTCTCTGTTTGATGCTGCACTTATT
genomic: TGAAGGACCTCTGTTTGATCACTGGGAAGGCTTCTTGGCTAGCGTACCTGgtaatatatc ... acttttgcagGATATCTATTGCTTGAATGCTGATGGGTCTCTGTTTGATGCTGCACTTATT
EST: gi|71438985|gb|DR820035.1|DR820035
EST:     TGAAGGACCTCTGTTTGATCACTGGGAAGGCTTCTTGGCTAGCGTACCTG                         GATATCTATTGCTTGAATGCTGATGGGTCTCTGTTTGATGCTGCACTTATT
genomic: TGAAGGACCTCTGTTTGATCACTGGGAAGGCTTCTTGGCTAGCGTACCTGgtaatatatc ... acttttgcagGATATCTATTGCTTGAATGCTGATGGGTCTCTGTTTGATGCTGCACTTATT
EST: gi|71427292|gb|DR808342.1|DR808342
EST:     TGAAGGACCTCTGTTTGATCACTGGGAAGGCTTCTTGGCTAGCGTACCTG                         GATATCTATTGCTTGAATGCTGATGGGTCTCTGTTTGATGCTGCACTTATT
genomic: TGAAGGACCTCTGTTTGATCACTGGGAAGGCTTCTTGGCTAGCGTACCTGgtaatatatc ... acttttgcagGATATCTATTGCTTGAATGCTGATGGGTCTCTGTTTGATGCTGCACTTATT
EST: gi|71438108|gb|DR819158.1|DR819158
EST:     TGAAGGACCTCTGTTTGATCACTGGGAAGGCTTCTTGGCTAGCGTACCTG                         GATATCTATTGCTTGAATGCTGATGGGTCTCTGTTTGATGCTGCACTTATT
genomic: TGAAGGACCTCTGTTTGATCACTGGGAAGGCTTCTTGGCTAGCGTACCTGgtaatatatc ... acttttgcagGATATCTATTGCTTGAATGCTGATGGGTCTCTGTTTGATGCTGCACTTATT