1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCACGGATCGGAGGGTGCTTCATCGGCTGAGCAGgtaggctgcaggctgtatctatttcaaattttaactgaagaaactggtttcttttaacttactagctatcgttatttgcgtgcag
species | Zea mays |
transcript | GRMZM5G883149_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTCACGGATCGGAGGGTGCTTCATCGGCTGAGCAG ACTTTAGTCAATGCCCTAACGCAAGCAAGAGAGCATCTGGCGAAGTCTCTTEST: gi|78087243|gb|DV515636.1|DV515636
genomic: GTCACGGATCGGAGGGTGCTTCATCGGCTGAGCAGgtaggctgca ... ttgcgtgcagACTTTAGTCAATGCCCTAACGCAAGCAAGAGAGCATCTGGCGAAGTCTCTT
EST: CTGAAAAGGTGTCTGGTCACGGATCGGAGGGTGCTTCATCGGCTGAGCAG ACTTTAGTCAATGCCCTAACGCAAGCAAGAGAGCATCTGGCGAAGTCTCTTEST: gi|166651131|gb|EG138260.1|EG138260
genomic: CTGAAAAGGTGTCTGGTCACGGATCGGAGGGTGCTTCATCGGCTGAGCAGgtaggctgca ... ttgcgtgcagACTTTAGTCAATGCCCTAACGCAAGCAAGAGAGCATCTGGCGAAGTCTCTT
EST: GAAAAGGTGCCTGGTCACGGATCGGAGGGTGCTTCATCGGCTGAGCAG ACTTTAGTCAATGCCCTAACGCAAGCAAGAGAGCATCTGGCGAAGTCTCEST: gi|78087242|gb|DV515635.1|DV515635
genomic: GAAAAGGTGTCTGGTCACGGATCGGAGGGTGCTTCATCGGCTGAGCAGgtaggctgca ... ttgcgtgcagACTTTAGTCAATGCCCTAACGCAAGCAAGAGAGCATCTGGCGAAGTCTC
EST: CTGAAAAGGTGTCTGGTCACGGATCGGAGGGTGCTTCATCGGCTGAGCAG ACTTTAGTCAATGCCCTAACGCAAGCAAGAGAGCATCTGGCGAAGTCTCTT
genomic: CTGAAAAGGTGTCTGGTCACGGATCGGAGGGTGCTTCATCGGCTGAGCAGgtaggctgca ... ttgcgtgcagACTTTAGTCAATGCCCTAACGCAAGCAAGAGAGCATCTGGCGAAGTCTCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCACGGATCGGAGGGTGCTTCATCGGCTGAGCAGgtaggctgcaggctgtatctatttcaaattttaactgaagaaactggtttcttttaacttactagctatcgttatttgcgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG