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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACTCGTCGCCAAAAGTATTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccagtggaaacaatatatacactgaaattctcattcattctcaatatgttgttttgttgcttcttttagcttttactcttgttgtatgttgcaa...

Basic information

species Zea mays
transcript GRMZM5G877316_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G877316_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os11g21990.1 (Oryza sativa), 5'ss of exon 4
GAACTCGTCGCCAAAAGTATTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccagtggaaacaatatatacactgaaattctcattcattctcaatatgttgttttgttgcttctt--ttagcttttactcttgttgtatgttgcaa-
||||| || ||||||||||| ||||| || || |||||||||||||||||||||||||||||||||||||||   |||  |  ||  |||| ||   |  ||||||| |  ||  |  || ||| ||| ||    ||  |  |   | | ||   || | ||    |   | 
GAACTTGTTGCCAAAAGTATCGAGTCCTCGGATCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtatttccatag--aattatatgtatg-tagaattctcttggatgttgcatttgtggttatgacctttaatagtctacatctatatttatagttaactaagat

upper sequence: GRMZM5G877316_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA18G47780.1 (Glycine max), 5'ss of exon 4
-GAACTCGTCGCCAAAAGTATTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccagtggaaacaatatatacactgaaattc-tcattcat--tctcaatat-gttgttttgttgcttcttttagcttttactcttgttgtatgttgcaa
 |||||  | || || |||||||| ||||| ||||| ||||| ||| | |||||||||||||||||||||| |  ||      || ||  | | |  ||  | ||  |||||  |  | ||| | |  || | || ||| |  ||| || |   |    | ||  |||  ||  
GGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAggca-agcttcctaaaccagcagaaaacctttattttatcattgttgatttcagtgtcattttcttattgttgatttcag-tgccatgggttttcaatga-gc--

upper sequence: GRMZM5G877316_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv04s0023g00670.t01 (Vitis vinifera), 5'ss of exon 5
GAACTCGTCGCCAAAAGTATTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccagtggaaacaatatatacactgaaattctcattcattctcaatatgttgttttgttgcttcttttagcttttactcttgttgtatgttgcaa-------------
|||||  |||| ||||| ||||| ||||| ||||| ||||||||  | |||||||||||||||||||||| |     ||     |   | ||||    ||| ||||      |  ||  |||| ||| || |      |    | ||| | |  |  || | |||||||             
GAACTTATCGCTAAAAGCATTGAATCTTCAGACCTTAACTTCTCTAGATACGGTGACACCTTTTTTGAGgca-----agcattgattctttata----gaagttctttaatgtcttccgtatgatgtcttctgaagcat----gatttcatttattgtggacgttgcaatgataaattccat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18662176|gb|BM501785.1|BM501785
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|26457615|gb|CA829198.1|CA829198
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|32826208|gb|CD965886.1|CD965886
EST:     TTGAGTCTTCCGGCCTCAACTTCTCACGTTACGGTGACGCC-TTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|78108789|gb|DV527206.1|DV527206
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|76912266|gb|DV164646.1|DV164646
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|22521606|gb|BU080417.1|BU080417
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GGGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|61117466|gb|DN558427.1|DN558427
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|71428140|gb|DR809190.1|DR809190
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|19436862|gb|BM953272.1|BM953272
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|23199654|gb|BU582219.1|BU582219
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGG-GACACCTTTTTTGAG                         G-GGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|19057519|gb|BM736186.1|BM736186
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|87153853|gb|DY398642.1|DY398642
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|18655178|gb|BM499983.1|BM499983
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|19057686|gb|BM736353.1|BM736353
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|19436861|gb|BM953271.1|BM953271
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|32823889|gb|CD963611.1|CD963611
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|78084825|gb|DV513218.1|DV513218
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA