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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACTCGTCGCCAAAAGTATTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccagtggaaacaatatatacactgaaattctcattcattctcaatatgttgttttgttgcttcttttagcttttactcttgttgtatgttgcaa...

Basic information

species Zea mays
transcript GRMZM5G877316_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G877316_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os11g21990.1 (Oryza sativa), 5'ss of exon 4
GAACTCGTCGCCAAAAGTATTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccagtggaaacaatatatacactgaaattctcattcattctcaatatgttgttttgttgcttctt--ttagcttttactcttgttgtatgttgcaa-
||||| || ||||||||||| ||||| || || |||||||||||||||||||||||||||||||||||||||   |||  |  ||  |||| ||   |  ||||||| |  ||  |  || ||| ||| ||    ||  |  |   | | ||   || | ||    |   | 
GAACTTGTTGCCAAAAGTATCGAGTCCTCGGATCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtatttccatag--aattatatgtatg-tagaattctcttggatgttgcatttgtggttatgacctttaatagtctacatctatatttatagttaactaagat

upper sequence: GRMZM5G877316_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA18G47780.1 (Glycine max), 5'ss of exon 4
-GAACTCGTCGCCAAAAGTATTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccagtggaaacaatatatacactgaaattc-tcattcat--tctcaatat-gttgttttgttgcttcttttagcttttactcttgttgtatgttgcaa
 |||||  | || || |||||||| ||||| ||||| ||||| ||| | |||||||||||||||||||||| |  ||      || ||  | | |  ||  | ||  |||||  |  | ||| | |  || | || ||| |  ||| || |   |    | ||  |||  ||  
GGAACTTATTGCTAAGAGTATTGAATCTTCAGACCTTAACTTTTCAAGATACGGTGACACCTTTTTTGAggca-agcttcctaaaccagcagaaaacctttattttatcattgttgatttcagtgtcattttcttattgttgatttcag-tgccatgggttttcaatga-gc--

upper sequence: GRMZM5G877316_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv04s0023g00670.t01 (Vitis vinifera), 5'ss of exon 5
GAACTCGTCGCCAAAAGTATTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccagtggaaacaatatatacactgaaattctcattcattctcaatatgttgttttgttgcttcttttagcttttactcttgttgtatgttgcaa-------------
|||||  |||| ||||| ||||| ||||| ||||| ||||||||  | |||||||||||||||||||||| |     ||     |   | ||||    ||| ||||      |  ||  |||| ||| || |      |    | ||| | |  |  || | |||||||             
GAACTTATCGCTAAAAGCATTGAATCTTCAGACCTTAACTTCTCTAGATACGGTGACACCTTTTTTGAGgca-----agcattgattctttata----gaagttctttaatgtcttccgtatgatgtcttctgaagcat----gatttcatttattgtggacgttgcaatgataaattccat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33093304|gb|CF053298.1|CF053298
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|211046031|gb|FL194891.1|FL194891
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGTCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|18655177|gb|BM499982.1|BM499982
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|26457615|gb|CA829198.1|CA829198
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|9254987|gb|BE345455.1|BE345455
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|87153853|gb|DY398642.1|DY398642
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|32823889|gb|CD963611.1|CD963611
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|76912266|gb|DV164646.1|DV164646
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|211256955|gb|FK951989.1|FK951989
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|211261820|gb|FK952010.1|FK952010
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|211256952|gb|FK951986.1|FK951986
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|78125566|gb|DV543950.1|DV543950
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|78108789|gb|DV527206.1|DV527206
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|211046032|gb|FL194892.1|FL194892
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|71428140|gb|DR809190.1|DR809190
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|61117466|gb|DN558427.1|DN558427
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|22546180|gb|BU098491.1|BU098491
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|211126102|gb|FL240301.1|FL240301
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTYTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|32944696|gb|CF049515.1|CF049515
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|211126108|gb|FL240307.1|FL240307
EST:     TGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACMCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACAC-CTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|78084825|gb|DV513218.1|DV513218
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|211259391|gb|FK952004.1|FK952004
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|211256944|gb|FK951978.1|FK951978
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAA
EST: gi|32826208|gb|CD965886.1|CD965886
EST:     TTGAGTCTTCCGGCCTCAACTTCTCACGTTACGGTGACGCC-TTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|211254505|gb|FK951973.1|FK951973
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|21809908|gb|BQ668226.1|BQ668226
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|19057716|gb|BM736383.1|BM736383
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|211259379|gb|FK951992.1|FK951992
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|211261819|gb|FK952009.1|FK952009
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCT
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCT
EST: gi|32944341|gb|CF049160.1|CF049160
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|50323109|gb|CO518235.1|CO518235
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|19436862|gb|BM953272.1|BM953272
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|211259393|gb|FK952006.1|FK952006
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|211046035|gb|FL194895.1|FL194895
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|211256957|gb|FK951991.1|FK951991
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|211256954|gb|FK951988.1|FK951988
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTSTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|211259389|gb|FK952002.1|FK952002
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|211126103|gb|FL240302.1|FL240302
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|211256947|gb|FK951981.1|FK951981
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|101399052|gb|EB821399.1|EB821399
EST:     TTGAGTCTTCCGACCTCAACTTCTTACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|19436922|gb|BM953332.1|BM953332
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|23199654|gb|BU582219.1|BU582219
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGG-GACACCTTTTTTGAG                         G-GGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|32943252|gb|CF048071.1|CF048071
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|22490114|gb|BU050037.1|BU050037
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|211254506|gb|FK951974.1|FK951974
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|211126104|gb|FL240303.1|FL240303
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|211256945|gb|FK951979.1|FK951979
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|18655176|gb|BM499981.1|BM499981
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|111433449|gb|EE297766.1|EE297766
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|213173273|gb|FM196319.1|FM196319
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|18662176|gb|BM501785.1|BM501785
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|50323108|gb|CO518234.1|CO518234
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|33093098|gb|CF053092.1|CF053092
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGAGACACCTTTTTTGAG                         GTGGATTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|18655178|gb|BM499983.1|BM499983
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|19436921|gb|BM953331.1|BM953331
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGNGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|22543088|gb|BU093526.1|BU093526
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|211256953|gb|FK951987.1|FK951987
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|33094426|gb|CF054420.1|CF054420
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|211126106|gb|FL240305.1|FL240305
EST:     YTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GYGGTTTYTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|22521606|gb|BU080417.1|BU080417
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GGGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
EST: gi|211126107|gb|FL240306.1|FL240306
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAA
EST: gi|211256948|gb|FK951982.1|FK951982
EST:     TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAG                         GTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA
genomic: TTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 866

GAACTCGTCGCCAAAAGTATTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAAGGAGACCGCCACCCTTATTCTATGTTAGATTGTGTGGCACAGCGTGAAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 784

GAACTCGTCGCCAAAAGTATTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAAGGAGACCGCCACCCTTATTCTATGTTAGATTGTGTGGCACAGCGTGAAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 615

GAACTCGTCGCCAAAAGTATTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAAGGAGACCGCCACCCTTATTCTATGTTAGATTGTGTGGCACAGCGTGAAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 684

GAACTCGTCGCCAAAAGTATTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccag ... gaaaatgcagGTGGTTTTTGTTGGAGGACGCACTCAGCCTGGCACTGTAAAACCTGAAGAAGGAGACCGCCACCCTTATTCTATGTTAGATTGTGTGGCACAGCGTGAAA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAACTCGTCGCCAAAAGTATTGAGTCTTCCGACCTCAACTTCTCACGTTACGGTGACACCTTTTTTGAGgtacggccagtggaaacaatatatacactgaaattctcattcattctcaatatgttgttttgttgcttcttttagcttttactcttgttgtatgttgcaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaacaa