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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCAGATCAACTCCTAGAGAAAAGGGTTAGATCCCGATTCTCTCATAGGAAACTTTTATTTATTTCGCCTTCGTTGGATGATATACAACGgtatgtgctttccctagactctttaggtaagaaacatgaaatgctcccgaattcccttatccaagccatcttttggtaactaacaaaatgcag

Basic information

species Zea mays
transcript GRMZM5G876520_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G876520_T04 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g49010.2 (Oryza sativa), 5'ss of exon 9
GATGCAGATCAACTCCTAGAGAAAAGGGTTAGATCCCGATTCTCTCATAGGAAACTTTTATTTATTTCGCCTTCGTTGGATGATATACAACGgtatgtgctttccctagactctttaggtaagaaacatgaaatgctcccgaattcccttatccaagccatcttttggtaactaacaaaatgcag
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GATGCAGACCAACTCCTAGAGAAAAGGGTTAGATCCCGGTTCTCTCATAGGAAGCTTCTGTTTGTTCCTTCTTCAGTGGATAGTTTACAGAGgttagccttgtgcattttttttttcaggctaaaacattcactgtttctcaagatctctattcaatccatcttttgacatttgaatgattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32804112|gb|CD956348.1|CD956348
EST:     TCTCATAGGAAACTTTTATTTATTTCGCCTTCGTTGGATGATATACAACG                         GTTGGTGGAGCATTTGCTTATACTGGCCAAAGACTCAGGTTTACCATCAAA
genomic: TCTCATAGGAAACTTTTATTTATTTCGCCTTCGTTGGATGATATACAACGgtatgtgctt ... caaaatgcagGTTGGTGGAGCATTTGCTTATACTGGCCAAAGACTCAGGTTTACCATCAAA