1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTACTTAGCGCAGATGATAATGCTAATATGATTGAGCTCCACTCGCACTTGATGAAACCTGACTATTGCAGCTCTGGACAGGGAAAATGTAGTGgtacttgattttcgaaatccttttctttcacttgttgtttatgcttgctttattattataaaatatgcacttgattctgtcttcaaaacatgcgtgcccgctgctctttgtactgtctgccctattttattgagttcttccccctcccctcctttaaactatgtttgcttactgttaatttaacaccag
species | Zea mays |
transcript | GRMZM5G875564_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TATTCCAGCTCTGGACAGGGAAAATGTAGTG AGAGCAGCAATACAGAATCTTCTGATGATGTTGGGCAACAGGAGTTGGATGEST: gi|211178686|gb|FL100545.1|FL100545
genomic: TATTGCAGCTCTGGACAGGGAAAATGTAGTGgtacttgatt ... ttaacaccagAGAGCAGCAATACAGAATCTTCTGATGATGTTGGGCAACAGGAGTTGGATG
EST: GCACTTGATGAAACCTGACTATTCCAGCTCTGGACAGGGAAAATGTAGTG AGAGCAGCAATACAGAATCTTCTGATGATGTTGGGCAACAGGAGTTGGEST: gi|211178687|gb|FL100546.1|FL100546
genomic: GCACTTGATGAAACCTGACTATTGCAGCTCTGGACAGGGAAAATGTAGTGgtacttgatt ... ttaacaccagAGAGCAGCAATACAGAATCTTCTGATGATGTTGGGCAACAGGAGTTGG
EST: GCACTTGATGAAACCTGACTATTCCAGCTCTGGACAGGGAAAATGTAGTG AGAGCAGCAATACAGAATCTTCTGATGATGTTGGGCAACAGGAGTTGGATGEST: gi|16137372|gb|BI894237.1|BI894237
genomic: GCACTTGATGAAACCTGACTATTGCAGCTCTGGACAGGGAAAATGTAGTGgtacttgatt ... ttaacaccagAGAGCAGCAATACAGAATCTTCTGATGATGTTGGGCAACAGGAGTTGGATG
EST: GCACTTGATGAAACCTGACTATTGCAGCTCTGGACAGGGAAAATGTAGTG AGAGCAGCAATACAGAATCCTCTGATGATGTTGGGCAACAGGAGTTGGATGEST: gi|211178685|gb|FL100544.1|FL100544
genomic: GCACTTGATGAAACCTGACTATTGCAGCTCTGGACAGGGAAAATGTAGTGgtacttgatt ... ttaacaccagAGAGCAGCAATACAGAATCTTCTGATGATGTTGGGCAACAGGAGTTGGATG
EST: GCACTTGATGAAACCTGACTATTCCAGCTCTGGACAGGGAAAATGTAGTG AGAGCAGCAATACAGAATCTTCTGATGATGTTGGGEST: gi|16137371|gb|BI894236.1|BI894236
genomic: GCACTTGATGAAACCTGACTATTGCAGCTCTGGACAGGGAAAATGTAGTGgtacttgatt ... ttaacaccagAGAGCAGCAATACAGAATCTTCTGATGATGTTGGG
EST: GCACTTGATGAAACCTGACTATTGCAGCTCTGGACAGGGAAAATGTAGTG AGAGCAGCAATACAGAATCTTCTGATGATGTTGGGCAACAGGAGTTGGATG
genomic: GCACTTGATGAAACCTGACTATTGCAGCTCTGGACAGGGAAAATGTAGTGgtacttgatt ... ttaacaccagAGAGCAGCAATACAGAATCTTCTGATGATGTTGGGCAACAGGAGTTGGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACTTAGCGCAGATGATAATGCTAATATGATTGAGCTCCACTCGCACTTGATGAAACCTGACTATTGCAGCTCTGGACAGGGAAAATGTAGTGgtacttgattttcgaaatccttttctttcacttgttgtttatgcttgctttattattataaaatatgcacttgattctgtcttcaaaacatgcgtgcccgctgctctttgtactgtctgccctattttattgagttcttccccctcccctcctttaaactatgtttgcttactgttaatttaacaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC