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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTACAGCACTACTACTTGGTGGGGTGCTTGGCCTACTTGAAACCCTACTGCTTGTTCTCTCTGCAAAACCTATCTTAGGCTACATGGGTGTAAAACCGgtaataatttatttattccttcttgtctattaatgttctttagtctgtttcagctaaaaattaaatgagtggtagctgattaatggttttccctataatt...

Basic information

species Zea mays
transcript GRMZM5G870170_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G870170_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os10g13940.1 (Oryza sativa), 5'ss of exon 4
CTCTACAGCACTACTACTTGGTGGGGTGCTTGGCCTACTTGAAACCCTACTGCTTGTTCTCTCTGCAAAACCTATCTTAGGCTACATGGGTGTAAAACCGgtaataatttatttattcc--ttcttgtctattaatgttctttagtctgtttcagc-taaaaat-taaatgagtggtagctgattaatggttttccctataatt
 ||||||||| ||||||||||||||||||| |||||  |  || | || || |||||| | |  ||||||||| ||||||||||||||||||| |||| ||||    ||  || || ||  ||| | | |  |||  |   ||| | ||| | | | |||| || ||||      | |     | |    |||| ||| |    
GTCTACAGCATTACTACTTGGTGGGGTGCTCGGCCTTTTACAAGCACTGCTTCTTGTTATTTGCGCAAAACCTCTCTTAGGCTACATGGGTGTGAAACAGgtatatgttccttcataccatttcctttgtggtaaaatcaattattttgtctaatcgtaaagatgtaaacatcaaggattgagtcatcattttttcctgt----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13381736|gb|BG458291.1|BG458291
EST:     TGCTTGTTCTCTCTGCAAAACCTATCTTAGGCTACATGGGTGTAAAACCG                         GACTCTGCGATGATGAAGCCCGCATTGCAGTACTTAGTTCTCAGATCTCTT
genomic: TGCTTGTTCTCTCTGCAAAACCTATCTTAGGCTACATGGGTGTAAAACCGgtaataattt ... tctccaacagGACTCTGCGATGATGAAGCCCGCATTGCAGTACTTAGTTCTCAGATCTCTT