Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgccaattacgttcttgctattgaattatggccgattgtttgtgaaactggacatttaatttaatttttcag

Basic information

species Zea mays
transcript GRMZM5G868433_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G868433_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os08g13690.1 (Oryza sativa), 5'ss of exon 4
TATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgccaatta-cgttcttgctat----tgaattatggc---cgattgtttgtgaaactggacatt--taatttaatttttcag
||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||| |||||   ||  |   |||||   |     |||| | | ||   || | || | | ||  | |   ||  |  ||| ||| | |||
TATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAGgttggtttatgaaccagttttcttagaaatgcgtgaactcttgcgtacgctggtgtattaactttgtgcttaattgtttgattctacag

upper sequence: GRMZM5G868433_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os04g51630.3 (Oryza sativa), 5'ss of exon 3
TATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttg------ccaattacgttcttgc---tattgaa-ttatggccgattgtttgtgaaactggacatttaatttaatttttcag
||||||||||||||| || |||||||||||||| ||||||||  |||||||||||||||||||| ||       |||| |  |   |||   | ||||| |||||    | |  | || ||    |  |   |  |||||||| |||
TATCAATGCCATGCACCCGAAGACCAGGAAGATTTTGCAGCTCTTGCGTTTGAGGCAGgtgggtgtggttttcacaatcatttgaatgcacgtgttgaaattatgatatagtact-gtcaattgaggaaaaaatgttaattttgcag

upper sequence: GRMZM5G868433_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA15G18170.1 (Glycine max), 5'ss of exon 4
TATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgg--gtttgccaattacgttcttgctattgaattatggccgattgtttgtgaaactg--gacatttaatttaatttt--tcag------------------
||||||||||||| |||| || || ||||||||  ||||||||||||||||||| |||||    | || | ||||||    |     ||   || | |  | |   || |  || ||  |  | |    || || ||  |||                   
TATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTTTGAGACAGgtaactgcttacaaattacaaaatgagattt---tttttgttggtcacttattgaattgctgttactggtattgatcttaatcaatgctagtaagtaacttga

upper sequence: GRMZM5G868433_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA09G06860.1 (Glycine max), 5'ss of exon 4
TATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtt--tgccaattacgttcttgctattgaattatggccgattgtttgtgaaactg--gacatttaatttaatttt--tcag-----------------
||||||||||||| ||||||| || ||||||||  ||||||||||||||||||| |||||    |  |  ||| |||  | |||  |||   || | |  | |   |||   || ||  |  | |   ||| || ||  |||                  
TATCAATGCCATGGATCCTAAAACAAGGAAGATTCTGCAGCTTCTGCGTTTGAGACAGgtaaactacttacaaatacaat-ttgagattct-tttttgttggtcacttgatgaattgctgctagtgtttttgatcttaatcaatgcttgtaagtaacttg

upper sequence: GRMZM5G868433_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv11s0052g00290.t01 (Vitis vinifera), 5'ss of exon 4
TATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgg-gtttgccaattacgttcttgctat-----tgaattatggccgattgtttgtga-------aactggacatttaatttaatttttcag--------
 |||||||| ||||| || |||||||||||||| ||||||||||| || ||||| |||||   | |||  | ||   ||  || | |     ||  || |   |  || | | | |       |||||||||   ||     || | | |        
GATCAATGCTATGCACCCGAAGACCAGGAAGATTTTGCAGCTTCTACGATTGAGACAGgtaaagattgatacttttttttgtgttttctttttggtttttttgctcttttctttaataattataactggacaaaaaaaaagtttctgctgatggtttt

upper sequence: GRMZM5G868433_T02 (Zea mays), 5'ss of exon 4
lower sequence: EFJ23123 (Selaginella moellendorffii), 5'ss of exon 3
TATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgccaattacgttcttgctattgaattatggccgattgtttgtgaaactggacatttaatttaatttttcag
|||||| | ||||||||| |||||| ||||||| ||||||||||| ||  || | |||||   ||        | ||   ||| ||||   ||    ||| |  |  |   |    |   ||  ||| ||       
TATCAACGACATGCATCCCAAGACCCGGAAGATCTTGCAGCTTCTTCGCCTGCGTCAGgtaaattccttgtgaaagt---tgcgattgtgata----cgagttctcttactatcacattctttcttttatag-----

upper sequence: GRMZM5G868433_T02 (Zea mays), 5'ss of exon 4
lower sequence: EFJ20182 (Selaginella moellendorffii), 5'ss of exon 3
TATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgccaattacgttcttgctattgaattatggccgattgtttgtgaaactggacatttaatttaatttttcag
|||||| | ||||||||| |||||| ||||||| ||||||||||| ||  || | |||||   ||        | | |     | |  ||  |  |     ||  | | |   |     ||| ||            
TATCAACGACATGCATCCCAAGACCCGGAAGATCTTGCAGCTTCTTCGCCTGCGTCAGgtaaattccttgtgaaagctgcgattgtgaaacga--gttctctgactatcacgttctttcttttatag----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4753534|gb|AI657444.1|AI657444
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|15632349|gb|BI679442.1|BI679442
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|14701065|gb|BI233483.1|BI233483
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|4646950|gb|AI622025.1|AI622025
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|32932701|gb|CF037513.1|CF037513
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|24764818|gb|CA399980.1|CA399980
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|211171434|gb|FK956282.1|FK956282
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|5915128|gb|AW052769.1|AW052769
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTCCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|211318387|gb|FL341244.1|FL341244
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAARGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|76922808|gb|DV169184.1|DV169184
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|166438461|gb|EG182561.1|EG182561
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCC
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCC
EST: gi|15554187|gb|BI644185.1|BI644185
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|9733002|gb|BE511754.1|BE511754
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|60350172|gb|DN217145.1|DN217145
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|211173119|gb|FK956304.1|FK956304
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACANG-CTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|5846778|gb|AI999861.1|AI999861
EST:     CCATGCNCCCTAAGACCAGGAAGATATTGCAGCTTCTCCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|15590144|gb|BI674760.1|BI674760
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|148940442|gb|EC885240.2|EC885240
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|211173115|gb|FK956300.1|FK956300
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGT
EST: gi|94477419|gb|EB706377.1|EB706377
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|211192857|gb|FL432748.1|FL432748
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTMACAT-STT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|148941047|gb|EC885904.2|EC885904
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|5922428|gb|AW055717.1|AW055717
EST:     CCATGCNCCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|5915120|gb|AW052761.1|AW052761
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTCCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|9733001|gb|BE511753.1|BE511753
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|78025749|gb|DV494136.1|DV494136
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|20299953|gb|BQ162896.1|BQ162896
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCAATGGAGTGTTCCTGAAAGTCAACAAAGCAACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|60338800|gb|DN205773.1|DN205773
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|148935172|gb|EC879210.2|EC879210
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|71438751|gb|DR819801.1|DR819801
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|60344948|gb|DN211921.1|DN211921
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|21987690|gb|BQ779218.1|BQ779218
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|71444618|gb|DR825668.1|DR825668
EST:     CTATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|15313112|gb|BI478567.1|BI478567
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|31350410|gb|CD434767.1|CD434767
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCGATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|32936880|gb|CF041699.1|CF041699
EST:     GCAGCTTCTGCGATTGAGGCAG                         ATCTTCAATGGTGTGTTCCTCAAAGTCAACAAGGCGACTATTAACATGCTA
genomic: GCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|60340627|gb|DN207600.1|DN207600
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|78084905|gb|DV513298.1|DV513298
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|32917266|gb|CF022078.1|CF022078
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|60357671|gb|DN224644.1|DN224644
EST:     CTAAGACCAGGAAGATATTGCAGCTTTTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|5296239|gb|AI782919.1|AI782919
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTCCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|6021537|gb|AW066465.1|AW066465
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|32866949|gb|CF006631.1|CF006631
EST:     CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
EST: gi|15313739|gb|BI478933.1|BI478933
EST:     CCATGCACCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAG                         ATCTTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT
genomic: CCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgc ... aatttttcagATATTCAATGGCGTGTTCCTGAAAGTCAACAAGGCTACCATTAACATGCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TATCAATGCCATGCATCCTAAGACCAGGAAGATATTGCAGCTTCTGCGTTTGAGGCAGgtgggtttgccaattacgttcttgctattgaattatggccgattgtttgtgaaactggacatttaatttaatttttcag

- - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - GCAGCT