Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGCCAAAAGGTTTTGCTTATGTTGAATTTCTGGAACAGGAAGGTGTTCAGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaatgcttatgttgcatggtctcaagagttccttttttaaaacacttgtcaatagtgctttacttctgctttaccttcttgctctgtgctctacag

Basic information

species Zea mays
transcript GRMZM5G862331_T04
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G862331_T04 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g52140.2 (Oryza sativa), 5'ss of exon 4
ACAGCCAAAAGGTTTTGCTTATGTTGAATTTCTGGAACAGGAAGGTGTTCAGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat-gcttatgttgcatggtctcaagagttcct--tttttaaaacacttgtcaatagtgctttacttctgc--tttacc---ttcttgctctgtgctctacag
|||||||||||||||||||||||| |||||||||||||| ||||  |||||||| ||||| || ||||||||||||||| |||||||||| ||||| |||||||||||||  |  |     |   || |    |  |      ||  ||||| | | |  | |    |||      ||  |||||    ||  || | ||||||| ||||
ACAGCCAAAAGGTTTTGCTTATGTGGAATTTCTGGAACAAGAAGCAGTTCAGGAGGCTCTGAATTTGAATGAATCTGAACTGCATGGTCGTCAGATAAAGgtgcagaaattaccaacagatccctgttttgtcacctgaaggattcaaaaactccttttcacatgtttttgtcctcgcaatttactcaatttctgttttgtgctcaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33093650|gb|CF053644.1|CF053644
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCGCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|74240412|gb|DT648326.1|DT648326
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCGCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|74244705|gb|DT652619.1|DT652619
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|71427532|gb|DR808582.1|DR808582
EST:     AGGAAGCTCTTAACTTGAATGAATTTGAATTGCATGGTCGCCAGATTAAG                         GTCGCGCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|28361540|gb|CB239896.1|CB239896
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCGCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|71419429|gb|DR804766.1|DR804766
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCGCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|26559376|gb|CA831611.1|CA831611
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCGCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|211420260|gb|FL241373.1|FL241373
EST:     GGAAGCTCTTA-CTTTGA-TGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCGCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: GGAAGCTCTTAACTT-GAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|8367197|gb|BE050133.1|BE050133
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|113701557|gb|EE679061.1|EE679061
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCGCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|211420264|gb|FL241377.1|FL241377
EST:     GGAAGCTCTTAACCTGGAATGAATCTGAAATGCATGGTCGCCAGATTAAG                         GTCGCCCCCAAAGAGGACTAATGTTCCTGGGA
genomic: GGAAGCTCTTAACTTG-AATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCC-AAAGAGGACTAATGTTCCTGGGA
EST: gi|91051981|gb|EB162399.1|EB162399
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCGCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|28361745|gb|CB240101.1|CB240101
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCGCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|71436658|gb|DR817708.1|DR817708
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCGCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|74240413|gb|DT648327.1|DT648327
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCGCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|28361810|gb|CB240166.1|CB240166
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCGCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|166582939|gb|EG166456.1|EG166456
EST:     GAAGCTCTTAACTTGAATGAATCTGAATTAAGCATGGTCGCCAGATTAAG                         GTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACG
genomic: GAAGCTCTTAACTTGAATGAATCTGAATT--GCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACG
EST: gi|28987157|gb|CB351492.1|CB351492
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCGCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|26557352|gb|CA829587.1|CA829587
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCGCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|78180902|gb|DV551275.1|DV551275
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCGCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|31911181|gb|CD651796.1|CD651796
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCGCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|28361626|gb|CB239982.1|CB239982
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCGCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|166476988|gb|EG283593.1|EG283593
EST:     GAATGAATCNGAATTGCATGGTCGCCAGATTAAG                         GTCGCCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACG
genomic: GAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCG-CCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACG
EST: gi|211300286|gb|FL241350.1|FL241350
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCCCCAAAGAGGACTAATG
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATG
EST: gi|211302416|gb|FL241357.1|FL241357
EST:     ACGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTTAG                         GTCGCCCCACATAGGACTAATGTTCCTGGGATGAAGCAGCGTC
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTC
EST: gi|60355238|gb|DN222211.1|DN222211
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCGCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|6721087|gb|AW308724.1|AW308724
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCGCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|101392226|gb|EB818041.1|EB818041
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCGCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|8577025|gb|BE129662.1|BE129662
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCGCCAAAGAGGACTAATGGTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|93015249|gb|EB640769.1|EB640769
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCGCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|211422856|gb|FL241384.1|FL241384
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|30088074|gb|CB886279.1|CB886279
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCGCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|74237334|gb|DT645248.1|DT645248
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCGCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|89759138|gb|DY688052.1|DY688052
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|9254701|gb|BE345169.1|BE345169
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCGCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|74234517|gb|DT642431.1|DT642431
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCGCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|74244706|gb|DT652620.1|DT652620
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|60351779|gb|DN218752.1|DN218752
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCGCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|87156058|gb|DY400847.1|DY400847
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCGCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|71427533|gb|DR808583.1|DR808583
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCGCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|22715374|gb|BU197729.1|BU197729
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCGCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
EST: gi|86470105|gb|DY236475.1|DY236475
EST:     AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAG                         GTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT
genomic: AGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 1318

ACAGCCAAAAGGTTTTGCTTATGTTGAATTTCTGGAACAGGAAGGTGTTCAGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGTGGGTATAATCCATACCATGGCTACCCTTATAGATCATACGGGGCACCGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 578

ACAGCCAAAAGGTTTTGCTTATGTTGAATTTCTGGAACAGGAAGGTGTTCAGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGTGGGTATAATCCATACCATGGCTACCCTTATAGATCATACGGGGCACCGT


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 480

ACAGCCAAAAGGTTTTGCTTATGTTGAATTTCTGGAACAGGAAGGTGTTCAGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGTGGGTATAATCCATACCATGGCTACCCTTATAGATCATACGGGGCACCGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 591

ACAGCCAAAAGGTTTTGCTTATGTTGAATTTCTGGAACAGGAAGGTGTTCAGGAAGCTCTTAACTTGAATGAATCTGAATTGCATGGTCGCCAGATTAAGgtgcagaaat ... tgctctacagGTCGCCCCAAAGAGGACTAATGTTCCTGGGATGAAGCAGCGTCCACCACGTGGGTATAATCCATACCATGGCTACCCTTATAGATCATACGGGGCACCGT