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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagactgtatctccattgtactctcaacaccccctcttttacctgtggttcttatctgaacatttgatatgaattgtgtag

Basic information

species Zea mays
transcript GRMZM5G851698_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G851698_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 5'ss of exon 4
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagactgtatctccattgtactctcaacaccccctcttttacctgtggttcttatctgaacatttgatatgaattgtgtag---
|| |||||||||||||||||||| || |||||||| || || ||||| |||||||| ||||| || ||| |||| |||||||||||||| || ||||| |||| | || || ||| || ||| |   ||          ||   ||    ||    |  ||||| ||| | || | | |||| | |   
GGCTATGTCTTCAAGATCATGGGGGGTTGTGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGGgtaaaaaggctctatttctattattgactt---------tcggatattcatgcccttgctctgaccatattatgttacttgtatggcag

upper sequence: GRMZM5G851698_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA18G26190.1 (Glycine max), 5'ss of exon 3
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtat-atagactgtatctccattgtactctcaacaccccctcttttacctgtggttcttatctgaacatttgatatgaattgtgtag-------------
|| ||||||||||| || |  || || |||||||||||||| ||||| ||||| || ||||| || ||| |||||||||| || ||| |||| ||||| ||||| ||  |   |   | | || |  | |   || ||  | | ||     | |||||   |      | |  | | |  | | ||              
GGCTATGTCTTCAAAATTACTGGAGGTTGTGACAAACAAGGATTCCCGATGAAACAGGGAGTGCTTACTCCTGGTCGTGTTCGACTTTTGCTTCACAGGGgtatgatgtagctttgatgcttttttttttgttcaacctatatgttcggcttagttctgtgccctttttatattttaatctttttaaatcaaatccattt

upper sequence: GRMZM5G851698_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA13G31130.1 (Glycine max), 5'ss of exon 5
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagactgtatctccattgtactctcaacaccccctcttttacctgtggttcttatctgaacatttgatatgaattgtgtag--------------
|||||||||||||| || |  || || || ||||| ||||| || |||||||||||||||||  ||||  |||||||||| |||||  |||| || |||||||| |  | | |    || ||    | |             |  | |     |  |  | ||||   || ||   | |   ||                
GGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTGCATAGAGgtatgtctattctgaagccttttgtattttgctgattataaatacatcctaattattagtttgaagcattcattcaactcacgtgttctatatttgaatt

upper sequence: GRMZM5G851698_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA16G09330.1 (Glycine max), 5'ss of exon 2
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtata--tagactgtatctcca-----ttgtactctcaacaccccctcttttacctgtggttcttatctg-aacatttgatatgaattgtgtag------
|| ||||||||||| ||||  ||||| |||||||||||||| || ||||||||||| ||||| || ||  ||||  |||| |  ||| ||||||||||||||| |  |  | || | || ||     ||    | | | ||       | |||      ||  | ||||| | |||||| |      | | |        
GGATATGTCTTCAAAATCACTGGTGGTTGTGACAAACAAGGATTTCCAATGAAGCAGGGAGTGCTAACACCTGGCTGTGTTCATCTTTTGCTCCACAGAGgtagaactgtaatgaagcttcaattttttaatttgtgatcatttaacatattataatgtgtcatcatctgcagcatttgttcaaccctctttttgtgcat

upper sequence: GRMZM5G851698_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA07G31840.3 (Glycine max), 5'ss of exon 3
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagactgtatctccattgtactctcaacaccccctcttttacctgtggttcttatctgaacatttgatatgaattgtgtag-----------------
|| ||||| ||||| ||||  ||||| |||||||||||||| ||||| |||||||| ||||| |||||  |||||||||| || ||| ||||||| |||||||    || |||    |   |  | |||          |  ||||    || ||  | |  | |   |||||   | |    |                   
GGATATGTTTTCAAAATCACCGGTGGGTGTGACAAACAAGGATTCCCTATGAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAGgta---ggaatgttctactgcttcaatctattgttgttttggtttataattgattgatgttggcagcattgatccaactgccatgttctgcatttggctgcgg

upper sequence: GRMZM5G851698_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA13G24630.1 (Glycine max), 5'ss of exon 4
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagactgtatctccattgtactctcaacaccccctcttttacctgtggttcttatctgaacatttgatatgaattgtgtag-----------------
|| ||||| ||||| ||||  ||||| |||||||||||||| |||||||||||||| |||||  ||||  |||||||||| || ||  ||||||| |||||||       | ||   ||    |  | |            || ||  | |  |  ||||   |    ||| | |  || |  | |                 
GGATATGTTTTCAAAATCACTGGTGGGTGTGACAAACAAGGATTCCCAATGAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgttttactgcctcaatg-tattgttgttttggtttataaatatcataattat--aattgattgctgttgatggcattgatacaactgccgtgttc

upper sequence: GRMZM5G851698_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA08G45770.1 (Glycine max), 5'ss of exon 4
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtata---tagactgtat-ctccattgtactctcaacaccccctct-tttacctgtg-gttcttat---ctgaacatttgatatgaattgtgtag-----
|| ||||||||||| || |  || || |||||||||||||| || ||||||||||| ||||| |||||| ||||||||||  | ||| |||| ||||| |||||    |||  |  || | | ||| |  |||    |     |||  |||  | || |  |||||    | |   ||| | || ||||   |       
GGCTATGTCTTCAAAATTACCGGAGGTTGTGACAAACAAGGATTTCCAATGAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgtagctttaatgccctattttgttcttcctatattttctgcttagttctgtgcccttatgttttaatttttttaaatcaattccatttttgtg

upper sequence: GRMZM5G851698_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT4G31700.1 (Arabidopsis thaliana), 5'ss of exon 4
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagactgtatctccattgtactctcaacaccccctcttttacctgtggttcttatctgaacatttgatatgaattg-tgtag-----------------------------
|| || || |||||||||| |||||| || || || ||||| |||||||||||||| |||||| ||||| | || ||||| |||||| |||| ||| ||||||  || ||  ||   || ||    ||| | |||     | | ||     | ||  ||| ||    | || | ||  ||| |||||                             
GGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGCTTCACCGAGgtaactaaac-ataataccttt----tctta-cacttttgcatctataatggatttgtatttgtgtgtgtg-tgtgttttgctgtagattaacattgtttcgtaatgggtgaacag

upper sequence: GRMZM5G851698_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT5G10360.2 (Arabidopsis thaliana), 5'ss of exon 4
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagactgtatctccattgtactctca-acaccccctcttttacctgtggttcttatctgaacatt--tgatatgaattgtgtag---------
|| || || |||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||| ||| | || |||||||| ||| |||| ||| ||||||  |||| |  | | |  |  ||   | | ||| |  |||||||     |   |||| | ||    ||  | || |||  ||  ||          
GGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGCTTCACCGAGgtac-tagattccaccccattgataaaattatacagcttctctttttttcattaatcttctgtgttttttatttatgtgatctggttattgtgtttag

upper sequence: GRMZM5G851698_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv03s0017g01350.t01 (Vitis vinifera), 5'ss of exon 4
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagactgtatctccattgtactctcaacaccccctcttttacctgtggttcttatctgaacat---ttga---tatgaattgtgtag----------------------
|| ||||| ||||||||||||||||| |||||||| ||||| || || |||||||| ||||| |||||| |||| |||||  | ||| |||| || || |||   || ||||   ||    |  |  || || | |   ||     |||   |||| ||| |  |      |||    |||||  | | |                        
GGCTATGTTTTCAAGATCATGGGTGGTTGTGACAAGCAAGGGTTTCCCATGAAGCAGGGAGTACTGACTCCTGGCCGTGTTAGTCTTTTGCTTCATAGGGgtgagtaaactgggactgttcta-atccttaaaaactgatcacaacccttaagttcatatttttatgcaagttgggtctatgagatttattacactttatgcttatttgagcag

upper sequence: GRMZM5G851698_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv07s0191g00060.t01 (Vitis vinifera), 5'ss of exon 4
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagactgtatctccatt----gtactctcaacaccccctcttttacctgtggttcttatctgaacatttgatatgaatt-gtgtag--------------------------------------------------------------------------------------------
|||||||| ||||| || ||||| || |||||||| ||||| || ||||||||||| ||||| |||||  | || || ||||  |||||||| |||||||||   |||||||     | | |    | |   | |         |  |||  ||  ||| |||| |     ||||   |  ||| | | |                                                                                             
GGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGCTTCACAGAGgttggtagactggtctactactttgtgcatatttagatgtgaaacaattaaatgcagtttttatatattgttttggagtttatttgggcattttctcctgttagcattgtggttaatttgtctcattctgcatttgctcgatgcttgatgaaactaatacgaattggcattttgcttgaacag

upper sequence: GRMZM5G851698_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv18s0001g06290.t01 (Vitis vinifera), 5'ss of exon 4
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgta---tatagactgtatctccatt---gtactctcaacaccccctcttttacctgtggttcttatctgaacattt-gatatgaattgtg-tag---------------------------------------------------------------
|| ||||| ||||| |||||||| || |||||||| ||||| |||||||||||||| |||||  | ||| ||||||||||  | ||  ||||||| ||||||    | | |   |||| |   |    || | || | ||||    |||  |  |   | |       |  || || ||      || || |||                                                               
GGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGCTCCATAGAGgtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcag

upper sequence: GRMZM5G851698_T02 (Zea mays), 5'ss of exon 4
lower sequence: PP1S253_38V6.1 (Physcomitrella patens), 5'ss of exon 3
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtat----atagactg-tatctccattgtactctcaacaccccctcttttacctgtggttcttat-------ctgaacatttgatatgaattgtgtag----------------------------------------------------------------------------------------
|| |||||||||||||||||||| || || ||||| || || |||||||||||||| |||||||| |||   || ||||| |  || ||| | |||||||||||    |||||  |  |      |||   ||   |      ||  | |    | |    ||||       |||  | | |  |   |   | || |                                                                                        
GGGTATGTCTTCAAGATCATGGGAGGCTGCGACAAGCAGGGTTTCCCAATGAAGCAGGGAGTTCTCACTCAAGGCCGTGTGCAGCTCCTGATGCACAGAGgtatggcgatagatagacacgggtgttggtgtcatgaagtaggctagtctgaacgagacatttatgtcctcgctgctcctcttgtgcaacaagcgttgagtggggttgtggagtggtttgatgggctcagtatgggtgcgagaatttagttctcccttttgtaacgattattgtgtgttgttgcag

upper sequence: GRMZM5G851698_T02 (Zea mays), 5'ss of exon 4
lower sequence: PP1S253_7V6.1 (Physcomitrella patens), 5'ss of exon 3
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagactgtatctccattgtac-tctcaacaccccctcttttacctgtggttcttatctgaacatttgat-atgaattgtgtag---------------------------------------------------------------------------
|| |||||||||||||| ||||| || || ||||| || || ||||| |||||||| |||||||| ||    || ||||| |  ||  || | |||||||||||  | | |  |      | |||  ||| |  |   | | | |  | |    | | |  |||  ||       |||| ||| || |                                                                           
GGGTATGTCTTCAAGATTATGGGAGGTTGCGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTTCTCACACAAGGCCGTGTGCAGCTCTTGATGCACAGAGgtatggata-taaacacagctggtatgtctgagtagatcatttatcgcgt-cactgcctcgctgtgcagaaagcgatgagttgcgttgaagtacctttgatgcactcagtacggccgcgaggttatgattttcatctgtaacgactcttgcctgttgtcgcag

upper sequence: GRMZM5G851698_T02 (Zea mays), 5'ss of exon 4
lower sequence: EFJ14726 (Selaginella moellendorffii), 5'ss of exon 3
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagactgtatctccattgtactctcaacaccccctcttttacctgtggttcttatctgaacatttgatatgaattgtgtag
|| |||||||||||||||||||| |||||||||||  | |||||||| |||||||| || || || |   |    ||||| ||||| ||| |  || |||||| |  || ||  |||   || |  ||||  | |   |  | | |  || | ||| |  |                         
GGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTCCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacga-tgcttcttttttcttttctcc-ctctttcgttctgatttgagattcgtgaccag----------------------

upper sequence: GRMZM5G851698_T02 (Zea mays), 5'ss of exon 4
lower sequence: EFJ26393 (Selaginella moellendorffii), 5'ss of exon 3
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagactgtatctccattgtactctcaacaccccctcttttacctgtggttcttatctgaacatttgatatgaattgtgtag
|| |||||||||||||||||||| |||||||||||  | |||||||| |||||||| || ||||| |   |    ||||| ||||| ||| |  || |||||| |  || ||  |||   || |  ||||  | |   |  | | |  || | ||| |  |                         
GGCTATGTCTTCAAGATCATGGGAGGATGTGACAAGGATGGCTTCCCTATGAAGCAGGGCGTTCTCAAGACGAAGCGTGTGCGCCTCCTGTTAAACCGAGgtaaaacga-tgcttcttttttcttttctcc-ctctttcgttctgatttgagattcgtgaccag----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149077949|gb|EE166681.2|EE166681
EST:     GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
genomic: GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
EST: gi|76923081|gb|DV169325.1|DV169325
EST:     GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
genomic: GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
EST: gi|211068384|gb|FL392622.1|FL392622
EST:     GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
genomic: GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
EST: gi|22542529|gb|BU092967.1|BU092967
EST:     GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGTAGGCGTAATGGTGAGCGCAGGAGGA
genomic: GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
EST: gi|211542573|gb|FL410011.1|FL410011
EST:     GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
genomic: GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
EST: gi|60395612|gb|DN228482.1|DN228482
EST:     TGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
genomic: TGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
EST: gi|15312778|gb|BI478369.1|BI478369
EST:     GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
genomic: GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
EST: gi|211431422|gb|FL393492.1|FL393492
EST:     KAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTTGAGCGCAGGAGG
genomic: GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGT-GAGCGCAGGAGG
EST: gi|20300566|gb|BQ163509.1|BQ163509
EST:     GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
genomic: GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
EST: gi|213171278|gb|FM184678.1|FM184678
EST:     GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
genomic: GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
EST: gi|78079211|gb|DV507623.1|DV507623
EST:     GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
genomic: GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
EST: gi|5081006|gb|AI738268.1|AI738268
EST:     GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGC
genomic: GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGC
EST: gi|148969224|gb|EE019976.2|EE019976
EST:     GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
genomic: GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
EST: gi|67016348|gb|CO445097.1|CO445097
EST:     GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
genomic: GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
EST: gi|78024666|gb|DV493053.1|DV493053
EST:     GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGC
genomic: GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGC
EST: gi|29946749|gb|CB816306.1|CB816306
EST:     GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
genomic: GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
EST: gi|19058404|gb|BM737071.1|BM737071
EST:     GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
genomic: GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
EST: gi|21987949|gb|BQ779477.1|BQ779477
EST:     GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
genomic: GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
EST: gi|22819122|gb|BU499212.1|BU499212
EST:     GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
genomic: GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
EST: gi|13149829|gb|BG320151.1|BG320151
EST:     AAGCAAGGAG-TRTMGA-TTRTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
genomic: AAGCAAGGAGTTCT-GACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
EST: gi|15632345|gb|BI679438.1|BI679438
EST:     GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
genomic: GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
EST: gi|148966135|gb|EE017078.2|EE017078
EST:     GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
genomic: GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
EST: gi|71428551|gb|DR809601.1|DR809601
EST:     GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
genomic: GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
EST: gi|19057795|gb|BM736462.1|BM736462
EST:     GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
genomic: GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
EST: gi|148955068|gb|EC900579.2|EC900579
EST:     GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
genomic: GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
EST: gi|78075296|gb|DV503730.1|DV503730
EST:     GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
genomic: GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
EST: gi|20300275|gb|BQ163218.1|BQ163218
EST:     GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
genomic: GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
EST: gi|78088886|gb|DV517279.1|DV517279
EST:     GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
genomic: GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
EST: gi|93284111|gb|EB676375.1|EB676375
EST:     GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
genomic: GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
EST: gi|31406383|gb|CD485115.1|CD485115
EST:     GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
genomic: GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
EST: gi|67010291|gb|CO439040.1|CO439040
EST:     GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
genomic: GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
EST: gi|18654801|gb|BM499606.1|BM499606
EST:     GAAGCATGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
genomic: GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
EST: gi|148969223|gb|EE019975.2|EE019975
EST:     GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
genomic: GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
EST: gi|31998590|gb|CD662145.1|CD662145
EST:     GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
genomic: GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
EST: gi|22935788|gb|BU572063.1|BU572063
EST:     GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAG                         GCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA
genomic: GAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1335

GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGTATTGTGAGCCAAGACCTATCTGTTATCAACTT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1302

GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGTATTGTGAGCCAAGACCTATCTGTTATCAACTT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1148

GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGTATTGTGAGCCAAGACCTATCTGTTATCAACTT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 476

GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagac ... aattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGTATTGTGAGCCAAGACCTATCTGTTATCAACTT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGCTCCACAGAGgtatatagactgtatctccattgtactctcaacaccccctcttttacctgtggttcttatctgaacatttgatatgaattgtgtag

- - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG