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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacactgttttggttgatcttgtattcatttttattttctattttggaatcagaatacattacaattgtggtgaagtttaatgtgattgttgaagttatggactttagtgcatcatctcaattgccaagcctttctctatcatgttttattcatgcacttttcttgcattgttttcag

Basic information

species Zea mays
transcript GRMZM5G850355_T05
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60355411|gb|DN222384.1|DN222384
EST:     CTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: CTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|60346286|gb|DN213259.1|DN213259
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATAGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTATGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|6020544|gb|AW065472.1|AW065472
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|14203539|gb|BG837216.1|BG837216
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|15427202|gb|BI543024.1|BI543024
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|32934694|gb|CF039506.1|CF039506
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211017640|gb|FL189740.1|FL189740
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTC
EST: gi|22520740|gb|BU079551.1|BU079551
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|5566889|gb|AI881800.1|AI881800
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|87156656|gb|DY401445.1|DY401445
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|14242859|gb|BG840665.2|BG840665
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|113702959|gb|EE680463.1|EE680463
EST:     G-GCAAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTTTATAG                         TGGGATGGGTCCAGATTTTCGTGTTTTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGC-AAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211014870|gb|FL189739.1|FL189739
EST:     GTGCAAAAGATTCAGGCACTAACACCAAAATATTGGAGTTGTCTATAG                         TGGGATGGGTC-AGATTTTCG
genomic: GTGCAAAAGATTCAGGCACTAACACCAAA-TATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCG
EST: gi|211535545|gb|FL366410.1|FL366410
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|32908069|gb|CF012882.1|CF012882
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|9254141|gb|BE344609.1|BE344609
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211408164|gb|FL390201.1|FL390201
EST:     GTGCAAAATATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|9461620|gb|BE453822.1|BE453822
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211156517|gb|FL164231.1|FL164231
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|14204267|gb|BG837944.1|BG837944
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|5456374|gb|AI834064.1|AI834064
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|29167732|gb|CB410992.1|CB410992
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|8367928|gb|BE050873.1|BE050873
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|12967998|gb|BG264945.1|BG264945
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211158124|gb|FL164253.1|FL164253
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGCAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211370171|gb|FL333604.1|FL333604
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|32912475|gb|CF017287.1|CF017287
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|40337252|gb|CK371322.1|CK371322
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|67018206|gb|CO446955.1|CO446955
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211100498|gb|FL307608.1|FL307608
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|26559204|gb|CA831439.1|CA831439
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|211352174|gb|FL343457.1|FL343457
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|31355634|gb|CD439991.1|CD439991
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
EST: gi|32906923|gb|CF011736.1|CF011736
EST:     GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG                         TGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC
genomic: GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacact ... ttgttttcagTGGGATGGGTCCAGATTTTCGTGTTCTGGTGAGAAAAAGTCGAAAGCAGGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAGgtactacactgttttggttgatcttgtattcatttttattttctattttggaatcagaatacattacaattgtggtgaagtttaatgtgattgttgaagttatggactttagtgcatcatctcaattgccaagcctttctctatcatgttttattcatgcacttttcttgcattgttttcag

- - - - - - - - - - - - - - -  TTGGAG