1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGATGAAACCTGGCAAATTGGTGATCGAGTTGATTGGTTGAAGGAAGGTTGTTATTGGTCTGGGACAATTACTAAGATAATCAATGAAGATCTGGTCGAGgtaagaatttaatgatgtaccatgttaccagaaattacctgttctcgtaaatttgctcgctattttcatgtgccatgcaatacatgatttacttcaacta...
species | Zea mays |
transcript | GRMZM5G848692_T03 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTTATTGGTCTGGGACAATTACTAAGATAATCAATGAAGATCTGGTCGAG ATAGAGCTGCCGGCACCTCCCATAGGTGAAGGAAAATGTTATAAAGCTAAAEST: gi|94477045|gb|EB706003.1|EB706003
genomic: GTTATTGGTCTGGGACAATTACTAAGATAATCAATGAAGATCTGGTCGAGgtaagaattt ... aactgtacagATAGAGCTGCCGGCACCTCCCATAGGTGAAGGAAAATGTTATAAAGCTAAA
EST: GTTATTGGTCTGGGACAATTACTAAGATAATCAATGAAGATCTGGTCGAG ATAGAGCTGCCGGCACCTCCCATAGGTGAAGGAAAATGTTATAAAGCTAAAEST: gi|211031185|gb|FL230067.1|FL230067
genomic: GTTATTGGTCTGGGACAATTACTAAGATAATCAATGAAGATCTGGTCGAGgtaagaattt ... aactgtacagATAGAGCTGCCGGCACCTCCCATAGGTGAAGGAAAATGTTATAAAGCTAAA
EST: GTTATTGGTCTGGGACAATTACTAAGATAATCAATGAAGATCTGGTCGAG ATAGAGCTGCCGGCACCTCCEST: gi|71440761|gb|DR821811.1|DR821811
genomic: GTTATTGGTCTGGGACAATTACTAAGATAATCAATGAAGATCTGGTCGAGgtaagaattt ... aactgtacagATAGAGCTGCCGGCACCTCC
EST: GTTATTGGTCTGGGACAATTACTAAGATAATCAATGAAGATCTGGTCGAG ATAGAGCTGCCGGCACCTCCCATAGGTGAAGGAAAATGTTATAAAGCTAAA
genomic: GTTATTGGTCTGGGACAATTACTAAGATAATCAATGAAGATCTGGTCGAGgtaagaattt ... aactgtacagATAGAGCTGCCGGCACCTCCCATAGGTGAAGGAAAATGTTATAAAGCTAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGAAACCTGGCAAATTGGTGATCGAGTTGATTGGTTGAAGGAAGGTTGTTATTGGTCTGGGACAATTACTAAGATAATCAATGAAGATCTGGTCGAGgtaagaatttaatgatgtaccatgttaccagaaattacctgttctcgtaaatttgctcgctattttcatgtgccatgcaatacatgatttacttcaacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA