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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCTCTCCACATACATCCGTGCAATGTTGTCTACACAAgtaaaattttatgttctgcctttacaatctcatccttccctcagtatctacactgcgtcttgtttggtttgcgcatttctaagtttgctgtcttttgaaattaactgtcctag

Basic information

species Zea mays
transcript GRMZM5G846548_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G846548_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g11500.1 (Oryza sativa), 5'ss of exon 4
GGTCTCTCCACATACATCCGTGCAATGTTGTCTACACAAgtaaaattttatgttctgcctttacaatctcatccttccctcagtatctacactgcgtcttgtttggtttgcgcatttctaagtttgctgtcttttgaaatt---aactgtc-ctag
|||||||| || ||||||||||||||| ||||||| |||||||   || | |  |||||    ||||||  ||  ||     | |   |      ||| | |||    ||| |  |||||  |    || | | | || ||   ||  | | | ||
GGTCTCTCGACTTACATCCGTGCAATGCTGTCTACTCAAgtaag-cttgacg--ctgcc----caatct--tcgctcatcttgcactcatgtcctgtcatattt----tgcactgttctagatggaatgccatattaatttttgaatggactccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88755251|gb|DY539392.1|DY539392
EST:     GGTCTCTCCACATACATCCGTGCAATGTTGTCTACACAA                         GCTCTTCTAGGGGCAATCGGAGTGGGGGAACAGTCCGCAACTGTCATAGGT
genomic: GGTCTCTCCACATACATCCGTGCAATGTTGTCTACACAAgtaaaatttt ... actgtcctagGCTCTTCTAGGGGCAATCGGAGTGGGGGAACAGTCCGCAACTGTCATAGGT