1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGAATTCAGGTACTTCAAGGGTCCTGAGCTTCTTGTTGACTTGCAAGATTATGATTACTCTCTGGACATGTGGAGTCTGGGCTGCATGTTTGCTGGAATGgtattacccacacgactattatacctatttgctgtcatatccctttttttagtatttcttgtgattccttatagacatgaccaatattaatctatttatcatatgctgttggttgcag
species | Zea mays |
transcript | GRMZM5G845755_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATGATTACTCTCTGGACATGTGGAGTCTGGGCTGCATGTTTGCTGGAATG ATTTTTCGTAAGGAGCCANNNNNNNACGGTCATGACAACCATGATCAACTTEST: gi|61117730|gb|DN558691.1|DN558691
genomic: ATGATTACTCTCTGGACATGTGGAGTCTGGGCTGCATGTTTGCTGGAATGgtattaccca ... ttggttgcagATTTTTCGTAAGGAGCCATTTTTTTACGGTCATGACAACCATGATCAACTT
EST: ATGATTACTCTCTGGACATGTGGAGTCTGGGCTGCATGTTTGCTGGAATG ATTTTTCGTAAGGAGCCANNNNNNNACGGTCATGACAACCATGATCAACTTEST: gi|60354727|gb|DN221700.1|DN221700
genomic: ATGATTACTCTCTGGACATGTGGAGTCTGGGCTGCATGTTTGCTGGAATGgtattaccca ... ttggttgcagATTTTTCGTAAGGAGCCATTTTTTTACGGTCATGACAACCATGATCAACTT
EST: GATTACTCTCTGGACATGTGGAGTCTGGGCTGCATGTTTGCTGGAATG ATTTTTCGTAAGGAGCCANNNNNNNACGGTCATGACAACCATGATCAACTTEST: gi|61117733|gb|DN558694.1|DN558694
genomic: GATTACTCTCTGGACATGTGGAGTCTGGGCTGCATGTTTGCTGGAATGgtattaccca ... ttggttgcagATTTTTCGTAAGGAGCCATTTTTTTACGGTCATGACAACCATGATCAACTT
EST: ATGATTACTCTCTGGACATGTGGAGTCTGGGCTGCATGTTTGCTGGAATG ATTTTTCGTAAGGAGCCANNNNNNNACGGTCATGACAACCATGATCAACTTEST: gi|61117731|gb|DN558692.1|DN558692
genomic: ATGATTACTCTCTGGACATGTGGAGTCTGGGCTGCATGTTTGCTGGAATGgtattaccca ... ttggttgcagATTTTTCGTAAGGAGCCATTTTTTTACGGTCATGACAACCATGATCAACTT
EST: ATGATTACTCTCTGGACATGTGGAGTCTGGGCTGCATGTTTGCTGGAATG ATTTTTCGTAAGGAGCCANNNNNNNACGGTCATGACAACCATGATCAACTTEST: gi|61117732|gb|DN558693.1|DN558693
genomic: ATGATTACTCTCTGGACATGTGGAGTCTGGGCTGCATGTTTGCTGGAATGgtattaccca ... ttggttgcagATTTTTCGTAAGGAGCCATTTTTTTACGGTCATGACAACCATGATCAACTT
EST: ATGATTACTCTCTGGACATGTGGAGTCTGGGCTGCATGTTTGCTGGAATG ATTTTTCGTAAGGAGCCANNNNNNNACGGTCATGACAACCATGATCAACTT
genomic: ATGATTACTCTCTGGACATGTGGAGTCTGGGCTGCATGTTTGCTGGAATGgtattaccca ... ttggttgcagATTTTTCGTAAGGAGCCATTTTTTTACGGTCATGACAACCATGATCAACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAATTCAGGTACTTCAAGGGTCCTGAGCTTCTTGTTGACTTGCAAGATTATGATTACTCTCTGGACATGTGGAGTCTGGGCTGCATGTTTGCTGGAATGgtattacccacacgactattatacctatttgctgtcatatccctttttttagtatttcttgtgattccttatagacatgaccaatattaatctatttatcatatgctgttggttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA