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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGTCGCAAAGATGATATCCAAAATATCTAGCGAGGGTCTGGCGTCATACAGTGATGCAGGTGATACTGTTGAACAAACAATTGGCTCCATAAGGACGgtaggccctatgctatcttgatcatgcacaacagataataagtttgtgactgacttgtaatcatagtaaataacag

Basic information

species Zea mays
transcript GRMZM5G843537_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G843537_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os05g47500.1 (Oryza sativa), 5'ss of exon 4
GATTGTCGCAAAGATGATATCCAAAATATCTAGCGAGGGTCTGGCGTCATACAGTGATGCAGGTGATACTGTTGAACAAACAATTGGCTCCATAAGGACGgtaggccctatgctatc--ttgatcatgcacaacagataataagtttgtgactgacttgtaatcatagtaaataacag
 |||||| |||||||| || |||||||||||| |||||| || || ||||||||  | ||||| || | ||||||||||||| |||| || ||||| |||||||||  | |  ||    |  |   |  |  ||| ||| ||| ||  |   || |   |     || | ||||||||
AATTGTCTCAAAGATGTTAGCCAAAATATCTAACGAGGGCCTAGCATCATACAGCAAGGCAGGGGACATTGTTGAACAAACAGTTGGATCTATAAGAACGgtaggcattttcttaatggtgcaatgtagatgacaaatagtaaattaatttgtg-cacatgtgtgtactcaataacag