1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTCCTACATCAGAAGAATTTCAAGAAGTAGATGGGGAGAGCGAAGAAAGAAGACGCGCTAGGATGGAACGGCATCAAAGAACTCGTGAACGAGCGgtaatgtgctagagcattaactaaaatagtcatcttatgtagctttctagcaccacaatttaatatctatggatacgtctatattcctggatacctaccc...
species | Zea mays |
transcript | GRMZM5G839757_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAAGAAGACGCGCTAGGATGGAACGGCATCAAAGAACTCGTGAACGAGCG GCAAAGGCTTTGGCTGAGAAGAATGAACGCGACATGCAGCAAACAA-GAGAEST: gi|33092165|gb|CF052159.1|CF052159
genomic: AAAGAAGACGCGCTAGGATGGAACGGCATCAAAGAACTCGTGAACGAGCGgtaatgtgct ... atactcacagGCAAAGGCTTTGGCTGAGAAGAATGAACGCGACATGCAGCAA-CAAAGAGA
EST: AAAGAAGACGCGCTAGGATGGAACGGCATCAAAGAACTCGTGAACGAGCG GCAAAGGCTTTGGCTGAGAAGAATGAACGCGACATGCAGCAACAAAGAGAGEST: gi|211076956|gb|FL060759.1|FL060759
genomic: AAAGAAGACGCGCTAGGATGGAACGGCATCAAAGAACTCGTGAACGAGCGgtaatgtgct ... atactcacagGCAAAGGCTTTGGCTGAGAAGAATGAACGCGACATGCAGCAACAAAGAGAG
EST: AAAGAAGACGCGCTAGGATGGAACGGCATCAAAGAACTCGTGAACGAGCG GCAAAGGCTTTGGCTGAGAAGAATGAACGCGACATGCAGCAACAAAGAGAGEST: gi|211076954|gb|FL060757.1|FL060757
genomic: AAAGAAGACGCGCTAGGATGGAACGGCATCAAAGAACTCGTGAACGAGCGgtaatgtgct ... atactcacagGCAAAGGCTTTGGCTGAGAAGAATGAACGCGACATGCAGCAACAAAGAGAG
EST: AAAGAAGACGCGCTAGGATGGAACGGCATCAAAGAACTCGTGAACGAGCG GCAAAGGCTTTGGCTGAGAAGAATGAACGCGACATGCAGCAACAA-GAGAG
genomic: AAAGAAGACGCGCTAGGATGGAACGGCATCAAAGAACTCGTGAACGAGCGgtaatgtgct ... atactcacagGCAAAGGCTTTGGCTGAGAAGAATGAACGCGACATGCAGCAACAAAGAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCCTACATCAGAAGAATTTCAAGAAGTAGATGGGGAGAGCGAAGAAAGAAGACGCGCTAGGATGGAACGGCATCAAAGAACTCGTGAACGAGCGgtaatgtgctagagcattaactaaaatagtcatcttatgtagctttctagcaccacaatttaatatctatggatacgtctatattcctggatacctaccc
- - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactaaaa