1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACAAGAGTAGCTCTTAACAATCAGAGGGCCATGTTTGGAGACATTCAAGGGAAAGTGAAGCAGCTGGGTGAAAAGTTCCCGGTAATCAGAGGTCTTCTTGgtaatatattgatcccttctctgccgccgcaggccgcagcactgatttcttgtcatgctggcatcgtattgctcactgctgtgtgacgctacatccatatataattatgcctaatccgcccttgcag
species | Zea mays |
transcript | GRMZM5G838961_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAAAGTGAAGCAGCTGGGTGAAAAGTTCCCGGTAATCAGAGGTCTTCTTG GTGCCATCAAGCGGAAGAAATCAAAGGACACCATAATCCTCTCGGCAGTGAEST: gi|5670923|gb|AI932186.1|AI932186
genomic: GAAAGTGAAGCAGCTGGGTGAAAAGTTCCCGGTAATCAGAGGTCTTCTTGgtaatatatt ... gcccttgcagGTGCCATCAAGCGGAAGAAATCAAAGGACACCATAATCCTCTCGGCAGTGA
EST: GAAAGTGAAGCAGCTGGGTGAAAAGTTCCCGGTAATCAGAGGTCTTCTTG GTGCCATCAAGCGGAAGAAATCAAAGGACACCATAATCCTCTCGGCAGTGAEST: gi|78125718|gb|DV544102.1|DV544102
genomic: GAAAGTGAAGCAGCTGGGTGAAAAGTTCCCGGTAATCAGAGGTCTTCTTGgtaatatatt ... gcccttgcagGTGCCATCAAGCGGAAGAAATCAAAGGACACCATAATCCTCTCGGCAGTGA
EST: GAAAGTGAAGCAGCTGGGTGAAAAGTTCCCGGTAATCAGAGGTCTTCTTG GTGCCATCAAGCGGAAGAAATCAAAGGACACCATAATCCTCTCGGCAGTGAEST: gi|211007692|gb|FL462067.1|FL462067
genomic: GAAAGTGAAGCAGCTGGGTGAAAAGTTCCCGGTAATCAGAGGTCTTCTTGgtaatatatt ... gcccttgcagGTGCCATCAAGCGGAAGAAATCAAAGGACACCATAATCCTCTCGGCAGTGA
EST: GAAAGTGAAGCAGCTGGGTGAAAAGTTCCCGGTAATCAGAGGTCTTCTTG GTGCCATCAAGCGGAAGAAATCAAAGGACACCATAATCCTCTCGGCAGTGAEST: gi|71758975|gb|DR956912.1|DR956912
genomic: GAAAGTGAAGCAGCTGGGTGAAAAGTTCCCGGTAATCAGAGGTCTTCTTGgtaatatatt ... gcccttgcagGTGCCATCAAGCGGAAGAAATCAAAGGACACCATAATCCTCTCGGCAGTGA
EST: GAAAGTGAAGCAGCTGGGTGAAAAGTTCCCGGTAATCAGAGGTCTTCTTG GTGCCATCAAGCGGAAGAAATCAAAGGACACCATAATCCTCTCGGCAGTGAEST: gi|76017094|gb|DT944264.1|DT944264
genomic: GAAAGTGAAGCAGCTGGGTGAAAAGTTCCCGGTAATCAGAGGTCTTCTTGgtaatatatt ... gcccttgcagGTGCCATCAAGCGGAAGAAATCAAAGGACACCATAATCCTCTCGGCAGTGA
EST: GAAAGTGAAGCAGCTGGGTGAAAAGTTCCCGGTAATCAGAGGTCTTCTTG GTGCCATCAAGCGGAAGAAATCAAAGGACACCATAATCCTCTCGGCAGTGAEST: gi|211238072|gb|FL481633.1|FL481633
genomic: GAAAGTGAAGCAGCTGGGTGAAAAGTTCCCGGTAATCAGAGGTCTTCTTGgtaatatatt ... gcccttgcagGTGCCATCAAGCGGAAGAAATCAAAGGACACCATAATCCTCTCGGCAGTGA
EST: GAAAGTGAAGCAGCTGGGTGAAAAGTTCCCGGTAATCAGAGGTCTTCTTG GTGCCATCAAGCGGAAGAAATCAAAGGACACCATAATCCTCTCGGCAGTGAEST: gi|76011973|gb|DT939143.1|DT939143
genomic: GAAAGTGAAGCAGCTGGGTGAAAAGTTCCCGGTAATCAGAGGTCTTCTTGgtaatatatt ... gcccttgcagGTGCCATCAAGCGGAAGAAATCAAAGGACACCATAATCCTCTCGGCAGTGA
EST: GAAAGTGAAGCAGCTGGGTGAAAAGTTCCCGGTAATCAGAGGTCTTCTTG GTGCCATCAAGCGGAAGAAATCAAAGGACACCATAATCCTCTCGGCAGTGA
genomic: GAAAGTGAAGCAGCTGGGTGAAAAGTTCCCGGTAATCAGAGGTCTTCTTGgtaatatatt ... gcccttgcagGTGCCATCAAGCGGAAGAAATCAAAGGACACCATAATCCTCTCGGCAGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAAGAGTAGCTCTTAACAATCAGAGGGCCATGTTTGGAGACATTCAAGGGAAAGTGAAGCAGCTGGGTGAAAAGTTCCCGGTAATCAGAGGTCTTCTTGgtaatatattgatcccttctctgccgccgcaggccgcagcactgatttcttgtcatgctggcatcgtattgctcactgctgtgtgacgctacatccatatataattatgcctaatccgcccttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG