1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AATGAGTCCTTTGACAAGGCTCTAGAAAAGGAGGGATTTGCTGCAGCCGCTCGCAATTGTACTCAAACTTTCTTGGAGAAGTTTGATAAAGGATCTGAAGgtatgctttcaggattgttaatcaatttgtacctcgcaattgcactcaaacttttgttctattttgaaatcaatttgatcattactggtgttcactgtcc...
species | Zea mays |
transcript | GRMZM5G838579_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCGCAATTGTACTCAAACTTTCTTGGAGAAGTTTGATAAAGGATCTGAAG ATGCTGCTATTCAACAAGTGAATTGGGACACCTCAAAAGTGAAGGATAAGCEST: gi|18450568|gb|BM428846.1|BM428846
genomic: TCGCAATTGTACTCAAACTTTCTTGGAGAAGTTTGATAAAGGATCTGAAGgtatgctttc ... tctttgacagATGCTGCTATTCAACAAGTGAATTGGGACACCTCAAAAGTGAAGGATAAGC
EST: TCGCAATTGTACTCAAACTTTCTTGGAGAAGTTTGATAAAGGATCTGAAG ATGCTGCTATTCAACAAGTGAATTGGGACEST: gi|87151650|gb|DY396439.1|DY396439
genomic: TCGCAATTGTACTCAAACTTTCTTGGAGAAGTTTGATAAAGGATCTGAAGgtatgctttc ... tctttgacagATGCTGCTATTCAACAAGTGAATTGGGAC
EST: TCGCAATTGTACTCAAACTTTCTTGGAGAAGTTTGATAAAGGATCTGAAG ATGCTGCTATTCAACAAGTGAATTGGGAC
genomic: TCGCAATTGTACTCAAACTTTCTTGGAGAAGTTTGATAAAGGATCTGAAGgtatgctttc ... tctttgacagATGCTGCTATTCAACAAGTGAATTGGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGAGTCCTTTGACAAGGCTCTAGAAAAGGAGGGATTTGCTGCAGCCGCTCGCAATTGTACTCAAACTTTCTTGGAGAAGTTTGATAAAGGATCTGAAGgtatgctttcaggattgttaatcaatttgtacctcgcaattgcactcaaacttttgttctattttgaaatcaatttgatcattactggtgttcactgtcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG