1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacacgagaaatctctgggtccttcaatttaacgcaacgttgaaattttcatcacgagaagtctcaggatagcgacatcaaaataaagcagacga...
species | Zea mays |
transcript | GRMZM5G836250_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATTTTACATCATCAAGGACAAGGGACAACGEST: gi|149064613|gb|EE286484.2|EE286484
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTT-ACATCATCAAGGACAAGG-ACAACG
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGACEST: gi|149085230|gb|EE174737.2|EE174737
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGACEST: gi|149056940|gb|EE156494.2|EE156494
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGACEST: gi|33466970|gb|CF244019.1|CF244019
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGACEST: gi|50327741|gb|CO522867.1|CO522867
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGACEST: gi|89759142|gb|DY688055.1|DY688055
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGACEST: gi|211007786|gb|FL012051.1|FL012051
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATTTACATCATCAAGGACNAGGACAACGTCACTCTGGAGGACEST: gi|149088446|gb|EE177549.2|EE177549
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGACEST: gi|149095912|gb|EE181574.2|EE181574
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGACEST: gi|148983226|gb|EE029190.2|EE029190
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGACEST: gi|71768089|gb|DR966026.1|DR966026
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGACEST: gi|71770843|gb|DR968780.1|DR968780
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGACEST: gi|32920842|gb|CF025654.1|CF025654
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGTGTCTCCATCGGAACG ATCTTTGGGATTTATATCATCAAGGACAAGGACAACGTCACTCTGGAGGACEST: gi|148932776|gb|EE285437.2|EE285437
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGACEST: gi|71317308|gb|DR795339.1|DR795339
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGACEST: gi|211005021|gb|FL012048.1|FL012048
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGACEST: gi|94476279|gb|EB705237.1|EB705237
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGACEST: gi|91055488|gb|EB165906.1|EB165906
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGACEST: gi|91877810|gb|EB407767.1|EB407767
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
EST: TCCCCTCGACGGCTCCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGACEST: gi|32920947|gb|CF025759.1|CF025759
genomic: TCCCCTCGACGGCTCC-TCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATTTATATCATCAAGGACAAGGACAACGTCACTCTGGAGGACEST: gi|149040104|gb|EE046754.2|EE046754
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGACEST: gi|76282215|gb|DV021783.1|DV021783
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATTTACATCATCAAGGACCAGGACAACGTCACTCTGGAGGACEST: gi|74244032|gb|DT651946.1|DT651946
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGACEST: gi|93284535|gb|EB676799.1|EB676799
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATTTEST: gi|32921813|gb|CF026625.1|CF026625
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTT
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATTTATATCATCAAGGACAAGGACAACGTCACTCTGGAGGACEST: gi|32921310|gb|CF026122.1|CF026122
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATTTATATCATCAAGGACAAGGACAACGTCACTCTGGAGGACEST: gi|71438223|gb|DR819273.1|DR819273
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTTGGATTTGCATCATCAAGGACAAGGACAACGTCACTCTGGAAGACEST: gi|71757120|gb|DR955057.1|DR955057
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
EST: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACG ATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
genomic: ATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacac ... tgttttgtagATCTTTGGGATTTACATCATCAAGGACAAGGACAACGTCACTCTGGAGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACTGCGTCTGCTTTGATCCCCTCGACGGCTCCTCCAACATCGACTGTGGCGTCTCCATCGGAACGgtatggacacgagaaatctctgggtccttcaatttaacgcaacgttgaaattttcatcacgagaagtctcaggatagcgacatcaaaataaagcagacga
- - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataaa