1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CATCATCAAGGACAAGGACAACGTCACTCTGGAGGACGTGCTGCAACCTGGCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACGgtaataaccaattaattctcttgaacccatcttctccgaaggtaatcatctgtaacgaaatataattgacatgcgcaaccaatctgatgcag
species | Zea mays |
transcript | GRMZM5G836250_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACGGCAGTTCCTGCACG CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCAEST: gi|50332539|gb|CO527665.1|CO527665
genomic: ACGGCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCA
EST: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACG CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCAEST: gi|78106829|gb|DV525247.1|DV525247
genomic: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCA
EST: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACG CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCAEST: gi|32920564|gb|CF025376.1|CF025376
genomic: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCA
EST: ACGGCAGTTCCTGCACG CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCAEST: gi|50331045|gb|CO526171.1|CO526171
genomic: ACGGCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCA
EST: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACG CTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCA
genomic: GCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACGgtaataacca ... tctgatgcagCTCGTTCTGAGCACTGGAACTGGTGTCAATGGCTTCACGCTCGACCCTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCATCAAGGACAAGGACAACGTCACTCTGGAGGACGTGCTGCAACCTGGCAAGAACATGCTCGCCGCCGGATACTGCATGTACGGCAGTTCCTGCACGgtaataaccaattaattctcttgaacccatcttctccgaaggtaatcatctgtaacgaaatataattgacatgcgcaaccaatctgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC