1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCTGCCCGCTATAGGTCATTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAGgtacgcaccattcggtgcaacaccttgtgcgcttagagacatgtagcaacgtatgtataaagacggctgattctgttcctgatgttgtcctggcag
species | Zea mays |
transcript | GRMZM5G835323_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAG GCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAAGCAACEST: gi|83279159|gb|DV943167.1|DV943167
genomic: GGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAGgtacgcacca ... gtcctggcagGCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGA-GCAAC
EST: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAG GCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTTTGAGCAACCEST: gi|21621225|gb|BQ619231.1|BQ619231
genomic: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAGgtacgcacca ... gtcctggcagGCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACC
EST: ----GCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAG GCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACCEST: gi|71767976|gb|DR965913.1|DR965913
genomic: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAGgtacgcacca ... gtcctggcagGCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACC
EST: ----GCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAG GCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACCEST: gi|50332863|gb|CO527989.1|CO527989
genomic: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAGgtacgcacca ... gtcctggcagGCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACC
EST: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAG GCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACCEST: gi|60356711|gb|DN223684.1|DN223684
genomic: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAGgtacgcacca ... gtcctggcagGCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACC
EST: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAG GCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACCEST: gi|33092763|gb|CF052757.1|CF052757
genomic: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAGgtacgcacca ... gtcctggcagGCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACC
EST: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAG GCCTTCTTTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACCEST: gi|211485134|gb|FL401515.1|FL401515
genomic: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAGgtacgcacca ... gtcctggcagGCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACC
EST: TCAGCTCCCAGG-TGATCAGAAGAAGAACGTCTCGAATTTCCTCGTCCAG GCCGGCATTGTGAAGAAGGAGCACATCANGATTCATGGTTTCTGAGCAEST: gi|4730501|gb|AI649667.1|AI649667
genomic: TCAGCTCC-AGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAGgtacgcacca ... gtcctggcagGCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCA
EST: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAG GCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACCEST: gi|71441941|gb|DR822991.1|DR822991
genomic: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAGgtacgcacca ... gtcctggcagGCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACC
EST: ----GCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAG GCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACCEST: gi|211116916|gb|FL407738.1|FL407738
genomic: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAGgtacgcacca ... gtcctggcagGCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACC
EST: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAG GCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACCEST: gi|28576067|gb|CB281959.1|CB281959
genomic: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAGgtacgcacca ... gtcctggcagGCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACC
EST: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAG GCCGGCATTGTGAAGAAGGAGCCCATCAAGATTCATGGTTTTTGAGCAACCEST: gi|78080734|gb|DV509146.1|DV509146
genomic: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAGgtacgcacca ... gtcctggcagGCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACC
EST: ----GCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAG GCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACCEST: gi|32865911|gb|CF005593.1|CF005593
genomic: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAGgtacgcacca ... gtcctggcagGCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACC
EST: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAG GCCGGCATTGTGAAAAAGGAGCCCATCAAGATTCATGGTTTTTGAGCAACCEST: gi|40303767|gb|CK348154.1|CK348154
genomic: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAGgtacgcacca ... gtcctggcagGCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACC
EST: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAG GCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACCEST: gi|113701876|gb|EE679380.1|EE679380
genomic: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAGgtacgcacca ... gtcctggcagGCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACC
EST: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCTTCGTCCAG GCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACCEST: gi|5510841|gb|AI857225.1|AI857225
genomic: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAGgtacgcacca ... gtcctggcagGCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACC
EST: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAG GCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACCEST: gi|91871868|gb|EB401825.1|EB401825
genomic: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAGgtacgcacca ... gtcctggcagGCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACC
EST: ----GCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAG GCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACCEST: gi|71761988|gb|DR959925.1|DR959925
genomic: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAGgtacgcacca ... gtcctggcagGCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACC
EST: ----GCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAG GCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACCEST: gi|4610125|gb|AI600964.1|AI600964
genomic: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAGgtacgcacca ... gtcctggcagGCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACC
EST: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAG GCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTTTGAGCAACCEST: gi|78112906|gb|DV531300.1|DV531300
genomic: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAGgtacgcacca ... gtcctggcagGCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACC
EST: ----GCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAG GCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACCEST: gi|166623445|gb|EG143889.1|EG143889
genomic: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAGgtacgcacca ... gtcctggcagGCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACC
EST: TGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAG GCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACCEST: gi|14204119|gb|BG837796.1|BG837796
genomic: TGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAGgtacgcacca ... gtcctggcagGCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACC
EST: ----GCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAG GCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACCEST: gi|87155007|gb|DY399796.1|DY399796
genomic: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAGgtacgcacca ... gtcctggcagGCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACC
EST: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCTTCGTCCAG GCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTTTGAGCAACCEST: gi|113660296|gb|DW818607.1|DW818607
genomic: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAGgtacgcacca ... gtcctggcagGCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACC
EST: GAAGAACGTCTCGAATTTCCTCGTCCAG GCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACCEST: gi|113702845|gb|EE680349.1|EE680349
genomic: GAAGAACGTCTCGAATTTCCTCGTCCAGgtacgcacca ... gtcctggcagGCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACC
EST: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAG GCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACCEST: gi|60395875|gb|DN228745.1|DN228745
genomic: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAGgtacgcacca ... gtcctggcagGCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACC
EST: ----GCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAG GCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACC
genomic: TTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAGgtacgcacca ... gtcctggcagGCCGGCATTGTGAAGAAGGAGCACATCAAGATTCATGGTTTCTGAGCAACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGCCCGCTATAGGTCATTCAGCTCCAGGGTGATCAGAGGAAGAACGTCTCGAATTTCCTCGTCCAGgtacgcaccattcggtgcaacaccttgtgcgcttagagacatgtagcaacgtatgtataaagacggctgattctgttcctgatgttgtcctggcag
- - - - - - - - - TCAGCT
- - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - AAGAAC