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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTGTCTTCCAGgttagttgcaacaactcctgacttagatatgttttattatgcagctatctgtggtattgctatcccggactagcagttttcatgttttaggtctttcatagcttgtgtgccaaggtcctttttgtaatcagatgcatctcctaatttgcaatgccatttgacctgttcatag

Basic information

species Zea mays
transcript GRMZM5G835235_T04
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G835235_T04 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g14860.1 (Oryza sativa), 5'ss of exon 4
ACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTGTCTTCCAGgttagttgcaacaactcctgacttagatatgttttat---------------tatgcagctatctgtggtattgctatcccggactagcagttttcatgttttaggtctttcatagcttgtgtgc--caaggtcctttttgtaa------tcagatg-----catctcctaatttgcaatgccatttgacctgttcatag
||||| ||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| ||   |  ||  |||| ||| |                || | ||||| || |   ||   || | |  |||||||    |  | || || ||     || | |  |   |   ||  | || ||  |||        | |||     ||| ||   | | |  ||  |||||   |  ||   ||
ACAGTTAGCTACATGGCTGAGCGTATTGTAGGGCAAGGTTCATTTGGGATTGTCTTCCAGgttagttgcaacatctttgggttttcatatatttcaccaatcaccaggaagctaagtagctaact-taacatcattaactct-actagcaccactttttttgtatgtagcaaattgttgatacacgataaccttctcttgttaagatgtcctaaatgttcttcatgtctgtaatagtgatatcattttgaccattttcag

upper sequence: GRMZM5G835235_T04 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g14860.4 (Oryza sativa), 5'ss of exon 4
ACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTGTCTTCCAGgttagttgcaacaactcctgacttagatatgttttat---------------tatgcagctatctgtggtattgctatcccggactagcagttttcatgttttaggtctttcatagcttgtgtgccaaggtccttt-ttgtaa-------tcagatg-----catctcctaatttgcaatgccatttgacctgttcatag
    | ||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| ||   |  ||  |||| ||| |                || | ||||| || |   ||   || | |  |||||||    |  | || || ||     || | |  |   | |    | | | |||| |         | |||     ||| ||   | | |  ||  |||||   |  ||   ||
----TTAGCTACATGGCTGAGCGTATTGTAGGGCAAGGTTCATTTGGGATTGTCTTCCAGgttagttgcaacatctttgggttttcatatatttcaccaatcaccaggaagctaagtagctaact-taacatcattaactct-actagcaccactttttttgtatgtagcaaattgttgatacacgataaccttctcttgttaagatgtcctaaatgttcttcatgtctgtaatagtgatatcattttgaccattttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67039601|gb|CO465856.1|CO465856
EST:     ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTGTCTTCCAG                         GCCAAGTGTTTGGAAACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAA
genomic: ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTGTCTTCCAGgttagttgca ... ctgttcatagGCCAAGTGTTTGGAAACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAA
EST: gi|22819758|gb|BU499848.1|BU499848
EST:     ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTGTCTTCCAG                         GCCAAGTGTTTGGAAACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAA
genomic: ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTGTCTTCCAGgttagttgca ... ctgttcatagGCCAAGTGTTTGGAAACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAA
EST: gi|211304795|gb|FL143344.1|FL143344
EST:     ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTGTCTTCCAG                         GCCAAGTGTTTGGAAACGGGTGAGACTGTTGCCATAAAGAA
genomic: ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTGTCTTCCAGgttagttgca ... ctgttcatagGCCAAGTGTTTGGAAACGGGTGAGACTGTTGCCATAAAGAA
EST: gi|87156577|gb|DY401366.1|DY401366
EST:     ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTGTCTTCCAG                         GCCAAGTGTTTGGAAACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAA
genomic: ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTGTCTTCCAGgttagttgca ... ctgttcatagGCCAAGTGTTTGGAAACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAA
EST: gi|211304794|gb|FL143343.1|FL143343
EST:     ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTGTCTTCCAG                         GCCAAGTGTTTGGAAACGGGTGAGACTGTTGCCATAAAGAAGGTTCTT
genomic: ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTGTCTTCCAGgttagttgca ... ctgttcatagGCCAAGTGTTTGGAAACGGGTGAGACTGTTGCCATAAAGAAGGTTCTT
EST: gi|24773942|gb|CA409196.1|CA409196
EST:     ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTGTCTTCCAG                         GCCAAGTGTTTGGAAACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAA
genomic: ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTGTCTTCCAGgttagttgca ... ctgttcatagGCCAAGTGTTTGGAAACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAA
EST: gi|26559736|gb|CA831971.1|CA831971
EST:     ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTGTCTTCCAG                         GCCAAGTGTTTGGAAACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAA
genomic: ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTGTCTTCCAGgttagttgca ... ctgttcatagGCCAAGTGTTTGGAAACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAA
EST: gi|32865540|gb|CF005222.1|CF005222
EST:     ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTGTCTTCCAG                         GCCAAGTGTTTGGAAACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTC
genomic: ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTGTCTTCCAGgttagttgca ... ctgttcatagGCCAAGTGTTTGGAAACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTC
EST: gi|32931957|gb|CF036769.1|CF036769
EST:     ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTGTCTTCCAG                         GCCAAGTGTTTGGAAACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAA
genomic: ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTGTCTTCCAGgttagttgca ... ctgttcatagGCCAAGTGTTTGGAAACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAA
EST: gi|32933926|gb|CF038738.1|CF038738
EST:     ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTGTCTTCCAG                         GCCAAGTGTTTGGAAACGGGTGAGACTGTTGCCACAAAGAAGGTTCTTCAA
genomic: ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTGTCTTCCAGgttagttgca ... ctgttcatagGCCAAGTGTTTGGAAACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAA