1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TGTTGGCAATATCCATCTTCAAGTGACGGACACAGTACTGCAGGAAGTCTTCCAAAGCATTGGTCCAGTAGAAGGGTGCAAGCTCATCAGAAAAGAAAAGgtggatctttctttattttaattaaaaaatgactatagatagcttgtaacagataaatccataccccacctgtccccaacacccactcgcccactcacct...
species | Zea mays |
transcript | GRMZM5G835213_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTCATCAGAAAAGAAAAG TCATCCTTTGGTTTCATTGACTACTATGACCGCAGATATGCTGCACTAGCAEST: gi|71324258|gb|DR798829.1|DR798829
genomic: CTCATCAGAAAAGAAAAGgtggatcttt ... gatgttgcagTCATCCTTTGGTTTCATTGACTACTATGACCGCAGATATGCTGCACTAGCA
EST: TCCAAAGCATTGGTCCAGTAGAAGGGTGCAAGCTCATCAGAAAAGAAAAG TCATCCTTTGGTTTCATTGACTACTATGACCGCAGATATGCTGCACTAGCAEST: gi|31361403|gb|CD445760.1|CD445760
genomic: TCCAAAGCATTGGTCCAGTAGAAGGGTGCAAGCTCATCAGAAAAGAAAAGgtggatcttt ... gatgttgcagTCATCCTTTGGTTTCATTGACTACTATGACCGCAGATATGCTGCACTAGCA
EST: TCCAAAGCATTGGTCCAGTAGAAGGGTGCAAGCTCATCAGAAAAGAAAAG TCATCCTTTGGTTTCATTGACTACTATGACCGCAGATATGCTGCACTGGCAEST: gi|22545671|gb|BU098030.1|BU098030
genomic: TCCAAAGCATTGGTCCAGTAGAAGGGTGCAAGCTCATCAGAAAAGAAAAGgtggatcttt ... gatgttgcagTCATCCTTTGGTTTCATTGACTACTATGACCGCAGATATGCTGCACTAGCA
EST: GAAAAGAAAAG TCATCCTTTGGTTTCATTGACTACTATGACCGCAGATATGCTGCACTGGCAEST: gi|29544652|gb|CB605032.1|CB605032
genomic: GAAAAGAAAAGgtggatcttt ... gatgttgcagTCATCCTTTGGTTTCATTGACTACTATGACCGCAGATATGCTGCACTAGCA
EST: CAGAAAAGAAAAG -CATCCTTTGG-TTCATTGACTACTATGACCGCAGATATGCTGCACTAGCAEST: gi|71317247|gb|DR795307.1|DR795307
genomic: CAGAAAAGAAAAGgtggatcttt ... gatgttgcagTCATCCTTTGGTTTCATTGACTACTATGACCGCAGATATGCTGCACTAGCA
EST: TCCAAAGCATTGGTCCAGTAGAAGGGTGCAAGCTCATCAGAAAAGAAAAG TCATCCTTTGGTTTCATTGACTACTATGACCGCAGATATGCTGCACTAGCAEST: gi|5268356|gb|AI770320.1|AI770320
genomic: TCCAAAGCATTGGTCCAGTAGAAGGGTGCAAGCTCATCAGAAAAGAAAAGgtggatcttt ... gatgttgcagTCATCCTTTGGTTTCATTGACTACTATGACCGCAGATATGCTGCACTAGCA
EST: TCCAAAGCATTGGTCCAGTAGAAGGGTGCAAGCTCATCAGAAAAGAAAAG TCATCCTTTGGTTTCATTGACTACTATGACCGCAGATATGCTGCACTGGCA
genomic: TCCAAAGCATTGGTCCAGTAGAAGGGTGCAAGCTCATCAGAAAAGAAAAGgtggatcttt ... gatgttgcagTCATCCTTTGGTTTCATTGACTACTATGACCGCAGATATGCTGCACTAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTGGCAATATCCATCTTCAAGTGACGGACACAGTACTGCAGGAAGTCTTCCAAAGCATTGGTCCAGTAGAAGGGTGCAAGCTCATCAGAAAAGAAAAGgtggatctttctttattttaattaaaaaatgactatagatagcttgtaacagataaatccataccccacctgtccccaacacccactcgcccactcacct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA