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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACAAGGGCAGAAGGACTCTGCCCAGGAAGGCTTCAATGCTGGGTTCAGGCAATCTGTAAACGCTGGCTACAAGTGGGGCCTTGTTCGCGGGGTTGCCAGgtgtatatccttccaagaactgatctcttgtattgccattctcctctagtcttgccctccgattttgatttcctttcctatctgtcgtcattccaaagtag

Basic information

species Zea mays
transcript GRMZM5G833593_T01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91056458|gb|EB166876.1|EB166876
EST:     CAATCTGTAAACGCTGGCTACAAGTGGGGCCTTGTTCGCGGGGTTGCCAG                         TGCGCTAGCCAATCTTCCAGACAGCTTGAAAGAGAAACTGGTGCCGGACGT
genomic: CAATCTGTAAACGCTGGCTACAAGTGGGGCCTTGTTCGCGGGGTTGCCAGgtgtatatcc ... tccaaagtagTGCGCTAGCCAATCTTCCAGACAGCTTGAAAGAGAAACTGGTGCCGGACGT
EST: gi|71443399|gb|DR824449.1|DR824449
EST:     CAATCTGTAAACGCTGGCTACAAGTGGGGCCTTGTTCGCGGGGTTGCCAG                         TGCGCTAGCCAATCTTCCAGACAGCTTGAAAGAGAAACTGGTGCCGGACGT
genomic: CAATCTGTAAACGCTGGCTACAAGTGGGGCCTTGTTCGCGGGGTTGCCAGgtgtatatcc ... tccaaagtagTGCGCTAGCCAATCTTCCAGACAGCTTGAAAGAGAAACTGGTGCCGGACGT
EST: gi|166524755|gb|EG130533.1|EG130533
EST:     AATCTGTAAACGCTGGCTACAAGTGGGGCCTTGTTCGCGGGGTTGCCAG                         TGCGCTAGCCAGTCTTCCAGACAGCTTGAAAGAGAAACTGGTGCCGGACGT
genomic: AATCTGTAAACGCTGGCTACAAGTGGGGCCTTGTTCGCGGGGTTGCCAGgtgtatatcc ... tccaaagtagTGCGCTAGCCAATCTTCCAGACAGCTTGAAAGAGAAACTGGTGCCGGACGT