Sequence
atgc intronic sequence ATGC exonic sequenceACTACGAAGAGTACATGGAGCTCAGAAAGATGATGATATGCCACCTATTGAAGCCATCCTTGCGCCGCTTGAAGCAGAGTTAAAGCTTTGTAGGAAGGAGgtagtacttacaacctacctcttacttgtttttgattgcgatgaagtcttcagatttttcttatacttcttggcatactgatttcctctcttgattgtatagatcatatatgtggttccttttaatgtagaggatacatatttactatacatgacaaaagaattcctgattcttttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G832989_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g50320.2 (Oryza sativa), 5'ss of exon 4
ACTACGAAGAGTACATGGAGCTCAGAAAGATGATGATATGCCACCTATTGAAGCCATCCTTGCGCCGCTTGAAGCAGAGTTAAAGCTTTGTAGGAAGGAGgtagtact-tacaacctacct-------cttacttgtttttgattgcg-atgaagtcttcagat--ttttcttatacttcttggca--tact--gatttcctctcttgattgtatagatcatatatgtggttccttttaatgtagaggatacatatttactatacatgacaaaagaat------tcctgattcttttcag
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TCTGCGAAGAGTGCATGCAGCCCAAAAAGATGATGATATGCCACCTATTGAAGCTATTCTTGCTCCACTTGAAGCTGAACTAAAGCTTGCTCGTCAAGAGgtaatactgtgttactcaaatggccaggcatggccatattttattgttcattttgtttggtgttgatattacaatattttctcacacttatttagattttgcctcttgcttccatag-tccta-attcaacttctcc-attccaccacatgcatgttcactataattgtctaaagaataagatttgctttttttcttcag
upper sequence: GRMZM5G832989_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT1G24764.1 (Arabidopsis thaliana), 5'ss of exon 4
ACTACGAAGAGTACATGGAGCTCAGAAAGATGATGATATGCCACCTATTGAAGCCATCCTTGCGCCGCTTGAAGCAGAGTTAAAGCTTTGTAGGAAGGAGgtagtacttacaacctacctcttacttgtttttgattgcgatgaagtcttcagatttttcttatacttcttggcatactgatttcctctcttgattgtatagatcatatatgtggttccttttaatgtagaggatacatatttactatacatgacaaaagaattcctgattcttttcag
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TTTAAGAAGAGTCCATGCTGCTCAAAAGGATGATGACATGCCTCCTATTGAAGCCATCCTTGCTCCATTAGAAGCTGAACTTAAGCTTGCACGATCAGAGgta-tattgtcattttaagtctaactgcttgctgtttactttcatat-----gggatattgaaagtttatgaggtcactgatcaaatctcttgtatctgtgtag---------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32845793|gb|CD985474.1|CD985474EST: AAGCCATCCTTGCGCCGCTTGAAGCAGAGTTAAAGCTTTGTAGAAAGGAG ATTGCAAAGCTTCAAGACGACAATAGAGCTTTGGACCGTTTAACAAAGCAA
genomic: AAGCCATCCTTGCGCCGCTTGAAGCAGAGTTAAAGCTTTGTAGGAAGGAGgtagtactta ... ttcttttcagATTGCAAAGCTTCAAGACGACAATAGAGCTTTGGACCGTTTAACAAAGCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTACGAAGAGTACATGGAGCTCAGAAAGATGATGATATGCCACCTATTGAAGCCATCCTTGCGCCGCTTGAAGCAGAGTTAAAGCTTTGTAGGAAGGAGgtagtacttacaacctacctcttacttgtttttgattgcgatgaagtcttcagatttttcttatacttcttggcatactgatttcctctcttgattgtatagatcatatatgtggttccttttaatgtagaggatacatatttactatacatgacaaaagaattcctgattcttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG