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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCCGGGCAACATCCTGACGGCAGGCGGGTTGGGTCCCTTCTGGCTCGTCGACATTGCCAACATGTGCCTCATCCTCCACCTGATCGGTGCATACCAGgtcagtcagcacatctcagttggtgcacaccacaccacactagaagaaattcagttgccacatttagtcgtatcttaagctaaagctaatgtctcaacgcag

Basic information

species Zea mays
transcript GRMZM5G830545_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G830545_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g65660.1 (Oryza sativa), 5'ss of exon 5
TGCTCCGGGCAACATCCTGACGGCAGGCGGGTTGGGTCCCTTCTGGCTCGTCGACATTGCCAACATGTGCCTCATCCTCCACCTGATCGGTGCATACCAGgtcagt-cagcacatctcagttggtgcacacca-caccacactagaagaaattcagttgccacatttagtcgtatcttaagctaaagctaatgtctcaacgcag
||||||||||||||||||||||||   |||  |||| |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||||||| || || |  |  ||   ||  | ||   |  | | ||  |  | |  || |  | | |  | |  | |||||| |    |   || ||| || ||||
TGCTCCGGGCAACATCCTGACGGCGTCCGGTATGGGGCCCTTCTGGCTCGTCGACATTGCCAACATGTGCCTCATCCTCCATCTCATCGGAGCATATCAGgtcagtacatcataagttcgtaactgagccccggtagtaaaatattattagtagagatcac-cgtgaaattat-tcttaaaccgg-gtgcatttctgaatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148982433|gb|EE028314.2|EE028314
EST:     TCGACATTGCCAACATGTGCCTCATCCTCCACCTGATCGGTGCATACCAG                         GTATATGCGCAGCCTATCTTTGCTTCGGTTGAGAGGTGGGCTGCCTCCCGG
genomic: TCGACATTGCCAACATGTGCCTCATCCTCCACCTGATCGGTGCATACCAGgtcagtcagc ... ctcaacgcagGTATATGCGCAGCCTATCTTTGCTTCGGTTGAGAGGTGGGCTGCCTCCCGG
EST: gi|91051424|gb|EB161842.1|EB161842
EST:     TCGACATTGCCAACATGTGCCTCATCCTCCACCTGATCGGTGCATACCAG                         GTATATGCGCAGCCTATCTTTGCTTCGGTTGAGAGGTGGGCTGCCTCCCGG
genomic: TCGACATTGCCAACATGTGCCTCATCCTCCACCTGATCGGTGCATACCAGgtcagtcagc ... ctcaacgcagGTATATGCGCAGCCTATCTTTGCTTCGGTTGAGAGGTGGGCTGCCTCCCGG
EST: gi|71762914|gb|DR960851.1|DR960851
EST:     TCGACATTGCCAACATGTGCCTCATCCTCCACCTGATCGGTGCATACCAG                         GTATATGCGCAGCCTATCTTTGCTTCGGTTGAGAGGTGGGCTGCCTCCCGG
genomic: TCGACATTGCCAACATGTGCCTCATCCTCCACCTGATCGGTGCATACCAGgtcagtcagc ... ctcaacgcagGTATATGCGCAGCCTATCTTTGCTTCGGTTGAGAGGTGGGCTGCCTCCCGG
EST: gi|89250248|gb|DY622034.1|DY622034
EST:     TCGACATTGCCAACATGTGCCTCATCCTCCACCTGATCGGTGCATACCAG                         GTATATGCGCAGCCTATCTTTGTTTCGGTTGAGAGGTGGGCTGCCTCCCGG
genomic: TCGACATTGCCAACATGTGCCTCATCCTCCACCTGATCGGTGCATACCAGgtcagtcagc ... ctcaacgcagGTATATGCGCAGCCTATCTTTGCTTCGGTTGAGAGGTGGGCTGCCTCCCGG
EST: gi|149007853|gb|EE040282.2|EE040282
EST:     TCGACATTGCCAACATGTGCCTCATCCTCCACCTGATCGGTGCATACCAG                         GTATATGCGCAGCCTATCTTTGCTTCGGTTGAGAGGTGGGCTGCCTCCCGG
genomic: TCGACATTGCCAACATGTGCCTCATCCTCCACCTGATCGGTGCATACCAGgtcagtcagc ... ctcaacgcagGTATATGCGCAGCCTATCTTTGCTTCGGTTGAGAGGTGGGCTGCCTCCCGG