1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCATCTGTGTCGCGGCCATCCTCGGTTCCACGCTGAACGGCGAGTTCGAGGACGTGAAGCTGCTCAACGACCTGCTCACCAAGAAGAACGCGGAGACAGGgtaaatactactggaaatagacaagcaagcaccctcgtaaaatatatttgtttgtgcgatgcgatcctcatgggcctgaactaaaacgtgcatgcag
species | Zea mays |
transcript | GRMZM5G826838_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GACGTGAAGCTGCTCAACGACCTGCTCACCAAGAAGAACGCGGAGACAGG CTGGGACACGCCGATCCACGTGGACGCGGCGAGCGGCGGEST: gi|149078676|gb|EE167467.2|EE167467
genomic: GACGTGAAGCTGCTCAACGACCTGCTCACCAAGAAGAACGCGGAGACAGGgtaaatacta ... gtgcatgcagCTGGGACACGCCGATCCACGTGGACGCGGCGAGCGGCGG
EST: GACGTGAAGCTGCTCAACGACCTGCTCACCAAGAAGAACGCGGAGACAGG CTGGGACACGCCGATCCACGTGGACGCGGCGAGCGGCGGGTTCATCGCGCCEST: gi|67023766|gb|CO452515.1|CO452515
genomic: GACGTGAAGCTGCTCAACGACCTGCTCACCAAGAAGAACGCGGAGACAGGgtaaatacta ... gtgcatgcagCTGGGACACGCCGATCCACGTGGACGCGGCGAGCGGCGGGTTCATCGCGCC
EST: GACGTGAAGCTGCTCAACGACCTGCTCACCAAGAAGAACGCGGAGACAGG CTGGGACACGCCGATCCACGTGGACGCGGCGAGCGGCGGGTTCATCGCGCCEST: gi|40334727|gb|CK368797.1|CK368797
genomic: GACGTGAAGCTGCTCAACGACCTGCTCACCAAGAAGAACGCGGAGACAGGgtaaatacta ... gtgcatgcagCTGGGACACGCCGATCCACGTGGACGCGGCGAGCGGCGGGTTCATCGCGCC
EST: GACGTGAAGCTGCTCAACGACCTGCTCACCAAGAAGAACGCGGAGACAGG CTGGGACACGCCGATCCACGTGGACGCGGCGAGCGGCGGGTTCATCGCGCCEST: gi|148968146|gb|EE019432.2|EE019432
genomic: GACGTGAAGCTGCTCAACGACCTGCTCACCAAGAAGAACGCGGAGACAGGgtaaatacta ... gtgcatgcagCTGGGACACGCCGATCCACGTGGACGCGGCGAGCGGCGGGTTCATCGCGCC
EST: GACGTGAAGCTGCTCAACGACCTGCTCACCAAGAAGAACGCGGAGACAGG CTGGGACACGCCGATCCACGTGGACGCGGCGAGCGGCGGGTTCATCGCGCCEST: gi|148930328|gb|EE284735.2|EE284735
genomic: GACGTGAAGCTGCTCAACGACCTGCTCACCAAGAAGAACGCGGAGACAGGgtaaatacta ... gtgcatgcagCTGGGACACGCCGATCCACGTGGACGCGGCGAGCGGCGGGTTCATCGCGCC
EST: GACGTGAAGCTGCTCAACGACCTGCTCACCAAGAAGAACGCGGAGACAGG CTGGGACACGCCGATCCACGTGGACGCGEST: gi|74245767|gb|DT653681.1|DT653681
genomic: GACGTGAAGCTGCTCAACGACCTGCTCACCAAGAAGAACGCGGAGACAGGgtaaatacta ... gtgcatgcagCTGGGACACGCCGATCCACGTGGACGCG
EST: GACGTGAAGCTGCTCAACGACCTGCTCACCCAGAAGAACGCGGAGACAGG CTGGGACACGCCGATCCACGTGGACGCGGCGAGCGGCGGGGTCATCGCGCCEST: gi|71436843|gb|DR817893.1|DR817893
genomic: GACGTGAAGCTGCTCAACGACCTGCTCACCAAGAAGAACGCGGAGACAGGgtaaatacta ... gtgcatgcagCTGGGACACGCCGATCCACGTGGACGCGGCGAGCGGCGGGTTCATCGCGCC
EST: GACGTGAAGCTGCTCAACGACATGCTCACCAAGAAGAACGCGGAGACAGG CTGGGACACGCCGATCCACGTGGACGCGGCAAACGGCGGGTTCATCGCGCCEST: gi|71436844|gb|DR817894.1|DR817894
genomic: GACGTGAAGCTGCTCAACGACCTGCTCACCAAGAAGAACGCGGAGACAGGgtaaatacta ... gtgcatgcagCTGGGACACGCCGATCCACGTGGACGCGGCGAGCGGCGGGTTCATCGCGCC
EST: GACGTGAAGCTGCTCAACGACCTGCTCACCAAGAAGAACGCGGAGACAGG CTGGGACACGCCGATCCACGTGGACGCGGCGAGCGGCGGGTTCATCGCGCC
genomic: GACGTGAAGCTGCTCAACGACCTGCTCACCAAGAAGAACGCGGAGACAGGgtaaatacta ... gtgcatgcagCTGGGACACGCCGATCCACGTGGACGCGGCGAGCGGCGGGTTCATCGCGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATCTGTGTCGCGGCCATCCTCGGTTCCACGCTGAACGGCGAGTTCGAGGACGTGAAGCTGCTCAACGACCTGCTCACCAAGAAGAACGCGGAGACAGGgtaaatactactggaaatagacaagcaagcaccctcgtaaaatatatttgtttgtgcgatgcgatcctcatgggcctgaactaaaacgtgcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC